HsaINT0187228 @ hg19
Intron Retention
Gene
ENSG00000197647 | ZNF433
Description
zinc finger protein 433 [Source:HGNC Symbol;Acc:20811]
Coordinates
chr19:12128691-12129116:-
Coord C1 exon
chr19:12128981-12129116
Coord A exon
chr19:12128752-12128980
Coord C2 exon
chr19:12128691-12128751
Length
229 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
3' ss Seq
TTCCTTGTTGTGTGTTGTAGGGA
3' ss Score
10.34
Exon sequences
Seq C1 exon
ATGTTTCAGGATTCAGTGGCCTTTGAGGATGTGGCTGTGACCTTCACCCAAGAGGAGTGGGCTTTGCTGGATCCTTCCCAGAAAAATCTCTGTAGAGATGTGATGCAAGAAACCTTCAGGAACCTGGCCTCTATAG
Seq A exon
GTAAGGGTGACAACATTACTTCCTTCAGTAAATGAGACAACAAGTTTTTTTTTTTTTCTGAGAACAAGTATTTTTAGCTCATGTATGCTGTTGAGTGATTTACAATGTGGACAGGGAATATTTGATAAATAAAGGAAGCATGCTTGCAGTGTACCATGAACATAGAATCATGTAATTTTTTAATAATTTTATACTAATTCAAGATTATTTTCCTTGTTGTGTGTTGTAG
Seq C2 exon
GGAAAAAATGGAAACCCCAGAACATATATGTAGAGTACGAAAATCTAAGGAGAAACCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197647-ZNF433:NM_001080411:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=89.1)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTTTCAGGATTCAGTGGCCT
R:
TTAGGTTTCTCCTTAGATTTTCGTAC
Band lengths:
196-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)