MmuINT0180056 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr17:33437526-33437947:+
Coord C1 exon
chr17:33437526-33437652
Coord A exon
chr17:33437653-33437889
Coord C2 exon
chr17:33437890-33437947
Length
237 bp
Sequences
Splice sites
5' ss Seq
TAGGTAACA
5' ss Score
6.25
3' ss Seq
TTCTTGCTGTTCATTTTTAGGGA
3' ss Score
10.69
Exon sequences
Seq C1 exon
GGTCCAGTGACTTTTGAGGACGTGGCTGTGAACTTCAGTCTAGGAGAATGGGCTCTGCTGGATTCTTACCAAAAGAAGCTCTACAGAGATGTGATGATGGAAACCTTCATGAACCTGATCTCCATAG
Seq A exon
GTAACAACAGCAGCAGAAACAACAAAAACCACCACCAACAACAACAATATAATTTATTAATATAATTTCTTTTCTTATCAATGTAGAGAAAAACTTAGTCATCTGTATAATTCTATGAGTTGAAATACTGAAAGGGAACATGGTGGTAAATATAACATTCTACAAGAAAAAAGCTAGAAAAGTAATGATTGCATATAAGGATGAATAATGTAATAATTTCTTGCTGTTCATTTTTAG
Seq C2 exon
GGAAGACAGAGGAAGAAAGTATGGATGTGAACTACCCACAGCTCCAGAGAAACTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
-Zfp955b:NM_001142957:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCAGTGACTTTTGAGGACG
R:
AGTTTCTCTGGAGCTGTGGGT
Band lengths:
181-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: