BtaINT0166116 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016721 | ZNF791
Description
zinc finger protein 791 [Source:HGNC Symbol;Acc:HGNC:26895]
Coordinates
chr7:14014338-14014696:-
Coord C1 exon
chr7:14014573-14014696
Coord A exon
chr7:14014399-14014572
Coord C2 exon
chr7:14014338-14014398
Length
174 bp
Sequences
Splice sites
5' ss Seq
TAAGTAAGG
5' ss Score
5.07
3' ss Seq
TTTTGGGGTCTGCATTTTAGGGG
3' ss Score
8.19
Exon sequences
Seq C1 exon
CCAGTGGCCTTTGAGGATGTGGCTGTGAACTTCACCCTGGAGGAGTGGGCTCTGCTGGGGCCTTCGCAGAAGAAACTCTACAGAGATGTGATGCGGGAAACTTTGAGTAACCTGGCCTTAATAA
Seq A exon
GTAAGGATGATGACATTCCTTCACTTAGAGAACAAGTGCTTCCTGCCCATCAATGTTGTTCTCAGATTTGGAATGGGGAAAGGGAATTCTTTGGTAAATAAATCATACTTTGAGGTCATCATAGACGTGTGAAGTAATAATTAATTTACTGATCTTTTGGGGTCTGCATTTTAG
Seq C2 exon
GGGATAAATGGGAGGACCATAACACTGATGATCAGTACAAGAACCAGGAAAGAAATCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016721:ENSBTAT00000022971:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.524
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=97.6)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTGGCCTTTGAGGATGTG
R:
TTCTTTCCTGGTTCTTGTACTGA
Band lengths:
178-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]