HsaINT0188418 @ hg38
Intron Retention
Gene
ENSG00000173875 | ZNF791
Description
zinc finger protein 791 [Source:HGNC Symbol;Acc:HGNC:26895]
Coordinates
chr19:12623700-12624710:+
Coord C1 exon
chr19:12623700-12623826
Coord A exon
chr19:12623827-12624649
Coord C2 exon
chr19:12624650-12624710
Length
823 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
3' ss Seq
ATTCTTGATCTACATTTTAGGGG
3' ss Score
6.77
Exon sequences
Seq C1 exon
GACTCAGTGGCTTTTGAGGATGTGTCTGTGAGCTTCAGCCAGGAGGAGTGGGCTCTGCTGGCTCCTTCACAGAAGAAACTCTACAGAGATGTGATGCAGGAAACATTCAAGAACCTGGCATCTATAG
Seq A exon
GTAAGGATGACATCATTTTTTCTTTTTTCTTTTTTTTTTTTTTTGGGGGGGGACAGAGTTTCACTATTGTCCAGGCTGGAGAGCAATGGCACAATCTCAGCTCACCACAACCTCAGCCTCCCAGGTTCAAGCAATTCTCCTACCTCAGCCTCCCGAGTAGCTGGGATTACAGGCACGTGCCACCATGCCTGGCTAATTTTTTTCTTTTTAGTAGAGACGGGATTTCACCATGTTGGTCAGGCTGGTCTTGAACTCCTGACCACAGGTAATCTGCCCGCTTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGTGCCTGGCCTTCTTTTTTTTTTTTTTTTTTGAGTCTCGTCCTGTTCCCCAGGGTGGAGTGCAGTGGCGGGATCTTGGCTCACTGTAACCTCCGCCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGTGCCCACCACCATGCCCGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTTATCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCACCCGCCTCAGCCTCCCAAAGTGTGGGGATTACAGGCATGAGCCACCGCACCCCAGTGACATCATTTTTTCATATCGTCAGTTAGAGAACTGCCATTTCTTGCTCATAATCACTGTTCCGAGATTTGGAATCTGAAAAGGAAACACTTCTGTAAATAAACCAGGCATGGTTACAGCTCATTGTGAACCTATAATCTAATAATATTTGTATAATTTTTAATAATTTATCATGATTATTCTTGATCTACATTTTAG
Seq C2 exon
GGGAAAAATGGGAAGACCCGAATGTTGAAGATCAACACAAAAACCAAGGACGAAATCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173875:ENST00000343325:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=0.810
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCAGTGGCTTTTGAGGATGT
R:
TTTCGTCCTTGGTTTTTGTGTTGA
Band lengths:
182-1005
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains