MmuINT1035742 @ mm10
Intron Retention
Gene
ENSMUSG00000074194 | Zfp791
Description
zinc finger protein 791 [Source:MGI Symbol;Acc:MGI:3648473]
Coordinates
chr8:85112210-85113633:-
Coord C1 exon
chr8:85113507-85113633
Coord A exon
chr8:85112271-85113506
Coord C2 exon
chr8:85112210-85112270
Length
1236 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TTTCTGGTTTTACATTTTAGCGA
3' ss Score
8.17
Exon sequences
Seq C1 exon
GATTCAGTGACCTTTGAGGACGTGTGTGTGACTTTCACTCAGGAAGAGTGGGATCTACTGCGTCCTGTACAGAAGAAACTCTACAAAGATGTGATGTGGGAAACTGTGAGGAACCTGGCCTCTGTGG
Seq A exon
GTAAGGATGCGGCTGTGGGAAACCGTGAGGAGCCTGACCTCTGTGGGTGTGGATGCGGCTGTGGGAAACTGTGAGGAACTTGGCCTCTGTGGGTGTGGATGCGGCCGTGGGGAACCTGGCCTCTGTGGGTGAAGATGTGGGCGTTGGAATCGTGATGAACCTGGCCTCTGTGGGTGAGGATGCAGCTGTTTCCTTCATGTAGGTAATTATATGAGAACGGATTTTTTGTTGTTGGGATTGTTTGAGATAAGGTCCTACTAGGTATCCCCACTTATGTAGATCAGGCTGGCCTTCAACTTTCAGAGATCTTCCTGCCTCTGCCTCCCCAGAGCTAAAATTAAAGTTGTGCCAGCCGGGCGGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAAGCGGAGTTCCAGGCCAGCCTGGTCTACAAATTGAGTTCCAGGACAGCCGGGGCTACACAGAGAAACCCTGTCTCGAAAAAAAAAAAAAAAAAAAAAAAAAAAGTTGTGCGACACCAGCCCTACTGACAGTGATTTCTTGCCCACCATCACTAATTTAAGAGTTAGAATGTAAGAGTGGCTCTTACTCCTGTTTCCGGCTTGCTTCTCTCTTGCCCTCTTGCTCCCCTACTCTCCGCCTTGCCTTCCCCCTCTCTACACACGGCCATGGCTGGCCTCTACTTCTCTACTCTCTCCCTCTCTCTGCCTTTCTTTTTTTTTTTTTTTTAAAGAATTTTTTTTTAAAGATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACGCACCAGAAGAGGGCATCAGATCTCTGTTAGAGGTGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTTCGGACCTTTGGAAGAGCAGGCGGGTGCTCTTACCCCCTGAGCCATCTCACCAGCCCCTCTCTCTGCCTTTCTACAATAAACGCCTTAAAACCATGAAAAAAAATAGAATATAAAAAGTGTTTACATTGATGTAAATGAGGCATTATGAACTTTTTTCAAACCTAGAACCTAAAAAGATTTTTGTAGCCGGGCAGTGGCAGCGCACACCTTTAATCCCAGCACTTGGGAGACAGAGACAGGTGGATTTCCAAGTGAGTTCCAGGACAGCCAGGGATATACAGAGAAACCCTGTCTCGAAAAACAGGAAAAAAAAATTTTTTTTTGTAATGGCTAAAAATGTATAATGGTTTTCTGGTTTTACATTTTAG
Seq C2 exon
CGAGTGAATTGGAAGACCAGGATGTTTCAAATCAGTACAGAATCCAAGAGGAAAATGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074194:ENSMUST00000211109:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTGACCTTTGAGGACGTG
R:
ACATTTTCCTCTTGGATTCTGTACTG
Band lengths:
182-1418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types