HsaINT0188205 @ hg19
Intron Retention
Gene
ENSG00000242852 | ZNF709
Description
zinc finger protein 709 [Source:HGNC Symbol;Acc:20629]
Coordinates
chr19:12577276-12577664:-
Coord C1 exon
chr19:12577538-12577664
Coord A exon
chr19:12577334-12577537
Coord C2 exon
chr19:12577276-12577333
Length
204 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
TTTCTGGGCCTGCATTTTAGGGG
3' ss Score
8.14
Exon sequences
Seq C1 exon
GACTCAGTGGTCTTTGAGGATGTGGCTGTGAACTTCACCCAGGAGGAGTGGGCTTTGCTGGGTCCCTCTCAGAAGAAACTCTACAGAGATGTGATGCAAGAAACCTTTGTTAACTTGGCCTCTATAG
Seq A exon
GTAAGAATGAAATTATTCCCTCACTTAGTCAATTAGAGAACAAGTGTTTCTTGCTCATCAGCAAGGTTCCAAGGTTTAGAATGTTGAAAGGGAATACTTTGGTAAATAAATCAGACAGGATAACAGCTCATCCTAGATTTAGAATCTAATAATTTTTCTGTAATTTCGAATAGGTTTAATGATTTTTCTGGGCCTGCATTTTAG
Seq C2 exon
GGGAAAACTGGGAGGAGAAGAACATTGAAGATCACAAAAATCAGGGGAGAAAGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000242852-ZNF709:NM_152601:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=NA C2=0.717
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGTGGTCTTTGAGGATGTGG
R:
AGCTTTCTCCCCTGATTTTTGTGA
Band lengths:
180-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)