HsaINT0188205 @ hg38
Intron Retention
Gene
NA
Description
NA
Coordinates
chr19:12466462-12466850:-
Coord C1 exon
chr19:12466724-12466850
Coord A exon
chr19:12466520-12466723
Coord C2 exon
chr19:12466462-12466519
Length
204 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
TTTCTGGGCCTGCATTTTAGGGG
3' ss Score
8.14
Exon sequences
Seq C1 exon
GACTCAGTGGTCTTTGAGGATGTGGCTGTGAACTTCACCCAGGAGGAGTGGGCTTTGCTGGGTCCCTCTCAGAAGAAACTCTACAGAGATGTGATGCAAGAAACCTTTGTTAACTTGGCCTCTATAG
Seq A exon
GTAAGAATGAAATTATTCCCTCACTTAGTCAATTAGAGAACAAGTGTTTCTTGCTCATCAGCAAGGTTCCAAGGTTTAGAATGTTGAAAGGGAATACTTTGGTAAATAAATCAGACAGGATAACAGCTCATCCTAGATTTAGAATCTAATAATTTTTCTGTAATTTCGAATAGGTTTAATGATTTTTCTGGGCCTGCATTTTAG
Seq C2 exon
GGGAAAACTGGGAGGAGAAGAACATTGAAGATCACAAAAATCAGGGGAGAAAGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000242852:ENST00000397732:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGTGGTCTTTGAGGATGTGG
R:
AGCTTTCTCCCCTGATTTTTGTGA
Band lengths:
180-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains