MmuINT0180016 @ mm9
Intron Retention
Gene
ENSMUSG00000074472 | Zfp872
Description
zinc finger protein 872 [Source:MGI Symbol;Acc:MGI:3588272]
Coordinates
chr9:22001511-22001879:+
Coord C1 exon
chr9:22001511-22001637
Coord A exon
chr9:22001638-22001818
Coord C2 exon
chr9:22001819-22001879
Length
181 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
TAATTTTTTTTTCCTTTTAGGGG
3' ss Score
10.67
Exon sequences
Seq C1 exon
GACTCAGTGGCTTTTGAGGATGTAGCTGTGAACTTCACCCATGAGGAGTGGGCTCTGCTGGACGATTCTCAGAAGGAACTGTACCAAGATGTGATGCAGGAAACCGTTGATAACCTGGCTTCTATTG
Seq A exon
GTAAGAGTGAAATTCCTTAGCCCTAGGTAATTAAAGAACAAATGTCTCTTGCTCATCAATGAGATTTCACTATTCAGCTGTAAAGGAATGCTTTGGTAAGTAGGTATGCTAGATTATGATGGTTCCTCGTGGACCTAGAACCTATGAGTTTTTCTGTCATTTAATTTTTTTTTCCTTTTAG
Seq C2 exon
GGGAAAATTGGCAAGACCAGAGCATTAGGGATCAGTGCAAAACTCAGGGAAAATACATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074472-Zfp872:NM_001033813:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCAGTGGCTTTTGAGGATGT
R:
TATGTATTTTCCCTGAGTTTTGCACT
Band lengths:
186-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: