RnoINT0168723 @ rn6
Intron Retention
Gene
ENSRNOG00000050600 | Zfp872
Description
zinc finger protein 872 [Source:MGI Symbol;Acc:MGI:3588272]
Coordinates
chr8:23193181-23193552:+
Coord C1 exon
chr8:23193181-23193307
Coord A exon
chr8:23193308-23193491
Coord C2 exon
chr8:23193492-23193552
Length
184 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
GTAATTTTTTTCCCTTTTAGGGG
3' ss Score
10.89
Exon sequences
Seq C1 exon
GACTCAGTGACTTTCGAGGATGTAACTGTGAACTTCAGCCGTGATGAGTGGGCTCTGCTGGACACTTCTCAGAGGGAACTGTACCGAGATGTGATGCTCGAAATCTTCACTAACTTGGCTTCTGTTG
Seq A exon
GTAAGAATGGAATTCCTTATCCTGGTTAATTAAAGAGCAGATGTTTCCTGCTCATTAATGAGATTTCACTGGTCAGCATGTGGGAAAGGAATACTTTGTAAGTAAGTATGCTAGATTATGATGGTTCCTTGTGGACATAGAACCTGTGGATTTTTCTGTCATTTGTAATTTTTTTCCCTTTTAG
Seq C2 exon
GGGGAAATTGGGAAAACCAGAGCACTGGGGATCAGTGTAAAACCCAGGAAAGAGACATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050600:ENSRNOT00000071703:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.548
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCAGTGACTTTCGAGGATGT
R:
TATGTCTCTTTCCTGGGTTTTACACT
Band lengths:
186-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]