Special

MmuINT0023508 @ mm9

Intron Retention

Gene
NA
Description
NA
Coordinates
chr7:148004487-148008077:-
Coord C1 exon
chr7:148007934-148008077
Coord A exon
chr7:148004614-148007933
Coord C2 exon
chr7:148004487-148004613
Length
3320 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
ATTATTTCTGTTTCTTTTAGGAG
3' ss Score
10.33
Exon sequences
Seq C1 exon
GCTGGAGCTGGCCATCTTTGGCACCTTTGGGAGCTCCTGCTGTTCTGCAGCAGAGGCACTGACGTTGTTAGGTGCTTTGTCATCCTGTGATCTGGTCCCAGAGGCACGCGTAGGGGCCCGGGATACTATAGAAGCGAGGAGATG
Seq A exon
GTGAGTGTCTGCCTGACGTCCTGGCGGGATCCAGCCTCCACAGGTCTCCCTGGAGGCTGCCCCAGGGTAGCGGGGGTTCCAACTCTCCTCCGTTTTGGGGCGGGGCTGTGCAGACAGTGGGGACTCTGGGTCTCGTCTGGTCCTTTTGCAGGGTGGTGCTAGGCGGACAGTGGGTCCCTGGTAAAGCTGTTAGTTGCCCACCCTGCGTAGTGTGCTCAGATCCTGCTGAGCGAGCCATCTCTGGGCGGCTGTGTTCCTGCCATACACTTCAGATGTGCTGATCACCGTGATCTCAGGGAAGGATTCCTATTGGCTGGCTTGTGTGGTTTCCATCAGCAGCTGGGCAAGAAAGATCCTGGAGCCAGATGCTGCTTTCTGCCATTTTGTTCTACATAGCTGATGAAAACTTGGTTAATGCGCAGTCGGCCAAATTTTCCACTATATTGATAACTGCTTTTTTCTTTATCTTGTGGAATTAACATTTTTATTGTTATTTTAGGTATACGCATGCACACACGCAAATGTGACGTGCTTGTGGATGAGGTCATTGGATCTGTTGGATCAGGGGTGGCAGTTGTGAGTCACCTGACATGGGCAATGGGAGCCAAACTGGTTCTCTGTAAGAACAGCAAGGGATTTTTAACCACTGATCCATCTCTCAAGCTTGGGGATTCCTTAAGTATCCTGCATAAATCATTATATTTGATTCAGAAGCTTTTAAAGTTCTGTGCTTGTTTTGCTTTTGAGAATGAAGGCTCACATTTATGGAAGGTACTGGCTGTACTCGTGAAGGGCCTGAAGCAGACCTTTGTGGGCAGCTTTTCATTGTAGCACATTTTCTTGTCATAGATATACACTCCTTTCTTTTATTTTTCAGGAAAAAAAAATCATATATTCCCAAGTGTCTTAAAAATCCAAAATATAGCTCAAAACAAATAGTTAATAAACAATAGGAAAAAAATTGAAAAAAGTGTAAGACTCAGATGTTGCTCTTAATTTGCGTTGTTAGGTGTGTGCATATTAATAGTGTCTGAAAAGAAAGCAAACCATAATTTTCAAATAGATTAGTAAGGGTTTTTTTTTTTTTTTGACAGTGTGTTTCCTTTTTTCTTTCTTCCTTTCTCTCTTTCTTTCTTTTTTTTTTTGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCTTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCTAGTGCTGGGATTAAAGGCGTGTGCCACCACGCCCGGCTGTGTATTTCTTACTTATATCAAAATAAAAATGTCTGGTCTTTCTCCTCCCAACTCCGAGACAGTGTCTCAGGGTGTAGTCCTGGCTAGCTTAAAATTCACAGAGATAGATCCACCTGCCTCTGCCCCTTGAGTGTTAAGATTAAAGGCATGCACCACCATCCTGGCTCATCTGTTGTTTTTGATGTGTAGTTATTTTATATGGGTACATAAAATAAAAGTTTTATTATTTATGAATTTTGTTTTGTTTTTCTTATCTTTAAAACGTATAACCAATCATTTTGCACTAATTGTACAGATGGGCAGGTTTAGAGAGGCACTTGTTTACATGCATGTCACACTTTGGTCACCCTCTGGTCGCTTTCCCACACCCTCTCTTCTCTCCCTGGCTCCCTGCCCTGCGGGTCCCAGCAGCTTCAGACCGGTCTGAGACAGATGTCTGCTCCTCTGTCCCCTGTAGTTTCTACATGTGAGAGGAAGGATGACATCCCTGCCCAAATATGGCTTATTTTGCATAAACATTTTCTGGTCTGATTTATTCTCCTGAATATAGCTTGATCCCCTTCTTTTTTATGGTTGAATAAAGTTTTAGAGTGATTATTATTTTGAGGGGAAGGATATGAGGATAGGAATTAGCTCTCGGGTCACCTAGTTATTATTTATTATTATTAATAATTTTGAGACAAGGGCTCACTGTGTAGCTTTAGCTGGTTTGGAAGACCAAGGTATAGACCAAGGTGATCTAAGCGCACAGAGCTCCCTCCACTTGCTTCTGACTTCTGAGTGCTGGGATTAAAGGCGTCCATCCTAAATTATTTTTTTTACATAAGCCTATAGTTTTAAAATTTTTAGTTTTGTTTTAGTTTTTTGTTTTGAGACAGGGTTTCTCTGCATAGCCCTGGCTGTCCTGGAACTTATTCTTTAGACCAGGCTGGCCTTGAACTCACAGAGATCCATCTACCTCTGCCTCCCCGGGTGCTGGGATTAAAGGTCTATACCACCACTACCACCTGGCATAGTTTTTTAAGATTTAATTTAAAATGTTTAATTCTTTGCGTTTGTGGATTTGTACATGTGATTAACAGTGTCTGTAGAAGCCAGAGAGGGACACCAGATGCCCGGGAGCTGGAAGTGTGCAGGTTGTGAACTGCCTACTGTGTGTGCCAGGAACTGAACGCAAGTCACCTTCAAGAACAGTGCATGCTCTTAAGCACTGAGCCACATATTTCCCCAGTCTCAAGCATATAGTTTTATCATATGCTAATGATCTTATTTTAGTATAAAAATCTTATTTTATTATATAACTTTTTTTATTATGCCAAGGCTTTTTATCATAATCTTTCTTTTCCCAAAATATATTTTTACACTTAAAAACTTTTACTTTTTTTTTCTTTTTTAAAGCAGGATTTCACTGTATAACTGTGGCTGTCTGGAACTCACTATGTAGACCAGACCTACCTCTGCCTCCCAAGTCTGAGAGTAAAGGCATTGCCACCATGCCCAACCCAAACCTTTTATTTATTTTTTTCTATTATTTGTTGCCTCCTTTTTGTGTTGTTTTGACTTGCTTTAATTTTTTTTTTTTTGAGTGAGCTTCTCACTATGTAGTCTTGTCTAGCTTGGCATTTACTTTGTAGATCAGGCTGGCCTTGAACTCATAGAGATCCTCTTGCCTTTACCTCTCAAGATGAGATTAAAAGTGAGTGCTACAATGCCCAGCTTACTTGGAAAAAACAATTTACAAAAACTTTACATTAGACAAATTTTTTTTTCTCAATAAAAAAGAACCTTAATTAGTAGGGCTTTGTGTGCTGGTGCGTGCCTTTGATCCCAGGCAGAGGCGGGCAGTCTCTGTGGACTGGAGGCCAGCTAAGATATATAGACCCTATTTCCAAAAAACCACCTAACCAACCAACCAAATTATTTTAATGAATAATTAAGGCCATCACAATCAGTTCTAACACTCTTCATCTTTGACCAAATTAGGAACTCTTGTCGATGTTAATGGTTAATATATTATTTCTGTTTCTTTTAG
Seq C2 exon
GAGCCAATGACATTTGATGATGTGGCCATTATTTTTTCTCCAGAGGAGTGGGAATGTCTGGACTCTGCTCAGCGGGACTTATACAGGGATGTAATGGTGGAGAATTGCAGAAACCTGCTGTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
-BC066028:NM_001001180:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
No protein impact description available





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=NA A=NA C2=NA
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NA

							
A:
NA

							
C2:
NA

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000079482





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000101667
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr1:247000075-247007905 
HsaINT0188146
(ZNF695)
Human
(hg19)
chr1:247163377-247171207 
LOW PSI
HsaINT0188146
(ZNF695)
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr18:57706439-57706762 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]










Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"