Special

MmuINT0179580 @ mm9

Intron Retention

Gene
Description
zinc finger protein 617 [Source:MGI Symbol;Acc:MGI:2684459]
Coordinates
chr8:74452101-74453097:+
Coord C1 exon
chr8:74452101-74452227
Coord A exon
chr8:74452228-74453036
Coord C2 exon
chr8:74453037-74453097
Length
809 bp
Sequences
Splice sites
5' ss Seq
TAGGTATGG
5' ss Score
7.37
3' ss Seq
TTTTCTGGGTCTACTTTTAGGAC
3' ss Score
10.01
Exon sequences
Seq C1 exon
GAGTCAGTGACTTTTGAGGATGTGGCTGTGAACTTCACCCTGGAGGAGTGGACTTTGCTGAATCCTTCACAGGAAAATCTTTACAGAGCGGTGATGAGAGAAACCATCAGGAACCTGCATGATATAG
Seq A exon
GTATGGGAGATAAAATTGTAGGCATATATTTTTCACAGCTTACCTTAATAAAAGGTTCAACTTCCCCTCTAGCCTACCACCCACCAGAGACAGTAGAAAAGAAAAGTTATTAGGATATGGGGGAGAAAGTGGATCTGTTTAGAGATATTTGGGGGGGGGGGAGGAGGCAATTCCAATCTTCACTGTTCTCAGTCTAGTCCACTCCCAAACATCAAACACTTGGCAGACACCACACATGAATCAGTGAGGGCAGTTCAATCCAGAAGAAATTGTGAGGCTCACCAGTCAGCCCAAGTCCACAGGAGAGACAAGAAGCTGCGTGAACCTCACAGGTTCTTTGATGAGTTTTACCTCTATGAAGTCACTATAAGCAAAGATCAGCAACACAGTGTAAGGTAAGCAAATGCATGCATATCGGCAGTGAAGACTAGCGAGGAGGAGCAAAGGGAACCAGTGTTCTACCTCCCACTGTTTGTGGTGTCATATTTATATTCCTTCTAAACATCACGTGTCCTTTCATGTGTTTGCTATAGCAAAACATCCTTTCACCTGTGTCCCCTTCAGCAAAACATCCTTTCACCTGTTTGCTCCAGCAAAACATCATTATATCCTGAGTCTCCAAAGAAACCAGAAATTTCCACTTTCCTCATTCAGAGAACAGTGTCTACTGCCCATCAATGCTGTTCTATGACTTAGGGTATGAAAATGGAGTATTTAGATGAATCAACTTGGTATGGTCACAGTGTAACAGGAACTTGAGTCATATTTTGCATAATAATTCATAATGGGTTTTCTGGGTCTACTTTTAG
Seq C2 exon
GACAGAAATTGGGAGAACAGAACACTGAAAATGCATACAAAAATCCTGGGGGAAATCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066880-Zfp617:NM_133358:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.093 A=NA C2=0.762
Domain overlap (PFAM):

C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTGACTTTTGAGGATGTGGC
R:
AGATTTCCCCCAGGATTTTTGT
Band lengths:
182-991
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types