RnoINT0168659 @ rn6
Intron Retention
Gene
ENSRNOG00000032552 | Zfp799
Description
zinc finger protein 799 [Source:RGD Symbol;Acc:1359692]
Coordinates
chr7:15072633-15073052:-
Coord C1 exon
chr7:15072926-15073052
Coord A exon
chr7:15072694-15072925
Coord C2 exon
chr7:15072633-15072693
Length
232 bp
Sequences
Splice sites
5' ss Seq
TAGGTGACG
5' ss Score
4.24
3' ss Seq
TTTCTTGCCCTGTATTTTAGGAA
3' ss Score
11.21
Exon sequences
Seq C1 exon
GAGCCAGTGACCTTGGAGGATGTGGCTGTGGACTTCACCCTGGAAGAGTGGACTATGCTGAACTTATGGCAAAAGCAGCTCTACAAAGAGGTGATGCAGGACACCTTGAGGAACCTGTGCTATATAG
Seq A exon
GTGACGATGACTATTGTTTTCTTACATAACCAATGAAGGAACGAATGATTCTTCCTCACCAATCCTGCTGCATGAATTAGATTATAGAAAAGAAGCATTTTGGGTAAATAAGTCAGGTGGAATCACTTTATACTGTGAATTTAATCAGAATTTAATAATCTTTTATTTATTTCTTTGTCTATTTGTTTATTTTTCTATAGTGGTGATTCATTTTTCTTGCCCTGTATTTTAG
Seq C2 exon
GAAACAAACAGGAACACCAAAATATTGAAAATGAGTATGAAAATCTCTGGAAAAAACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032552:ENSRNOT00000037708:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCAGTGACCTTGGAGGAT
R:
TTCAATATTTTGGTGTTCCTGTTTGT
Band lengths:
156-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]