MmuINT1035744 @ mm10
Intron Retention
Gene
ENSMUSG00000095253 | Zfp799
Description
zinc finger protein 799 [Source:MGI Symbol;Acc:MGI:2443934]
Coordinates
chr17:32821778-32822200:-
Coord C1 exon
chr17:32822074-32822200
Coord A exon
chr17:32821839-32822073
Coord C2 exon
chr17:32821778-32821838
Length
235 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAAG
5' ss Score
3.29
3' ss Seq
TCTCTTGATCTGTATTTTAGGAA
3' ss Score
10.59
Exon sequences
Seq C1 exon
GAGTCAGTGACCTTGGAGGATGTGGCTGTGAACTTCACCTTGGAAGAGTGGACTATGCTGAATGCATCCCAAAAGGAGCTCTACAAAGATGTGATGCAGGACACCTTGAGGAACCTGTCCTATATAG
Seq A exon
GTGAAGGTGACATTCTTTTCTTACTTAGCCAATGAAAAAACAAATGGTTCTTCCACACCACGCCTGCTGTGTGAATTGGATTATAGAAAAGAAACATGTTGGGTTAATAAGTCAGGTGGAATCACTTTCTACTGTGAATTTAACCAGAATCTTTTATTTGTTTCTTTGTTTGTCTATTTGTTTCTTTATTTGTTTTTCTGTAGCAGTAATTCATTTCTCTTGATCTGTATTTTAG
Seq C2 exon
GAAACAAATGGGAACACCAAAATATTGAAAATGAGTATGAAACTCTCTGGAGAAAACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000095253:ENSMUST00000202988:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0202611=RyR=PU(72.4=97.7),PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0202611=RyR=PD(17.3=42.9),PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGACCTTGGAGGATGTGG
R:
AGTTTTCTCCAGAGAGTTTCATACT
Band lengths:
181-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types