MmuINT0179580 @ mm10
Intron Retention
Gene
ENSMUSG00000066880 | Zfp617
Description
zinc finger protein 617 [Source:MGI Symbol;Acc:MGI:2684459]
Coordinates
chr8:71928202-71929198:+
Coord C1 exon
chr8:71928202-71928328
Coord A exon
chr8:71928329-71929137
Coord C2 exon
chr8:71929138-71929198
Length
809 bp
Sequences
Splice sites
5' ss Seq
TAGGTATGG
5' ss Score
7.37
3' ss Seq
TTTTCTGGGTCTACTTTTAGGAC
3' ss Score
10.01
Exon sequences
Seq C1 exon
GAGTCAGTGACTTTTGAGGATGTGGCTGTGAACTTCACCCTGGAGGAGTGGACTTTGCTGAATCCTTCACAGGAAAATCTTTACAGAGCGGTGATGAGAGAAACCATCAGGAACCTGCATGATATAG
Seq A exon
GTATGGGAGATAAAATTGTAGGCATATATTTTTCACAGCTTACCTTAATAAAAGGTTCAACTTCCCCTCTAGCCTACCACCCACCAGAGACAGTAGAAAAGAAAAGTTATTAGGATATGGGGGAGAAAGTGGATCTGTTTAGAGATATTTGGGGGGGGGGGAGGAGGCAATTCCAATCTTCACTGTTCTCAGTCTAGTCCACTCCCAAACATCAAACACTTGGCAGACACCACACATGAATCAGTGAGGGCAGTTCAATCCAGAAGAAATTGTGAGGCTCACCAGTCAGCCCAAGTCCACAGGAGAGACAAGAAGCTGCGTGAACCTCACAGGTTCTTTGATGAGTTTTACCTCTATGAAGTCACTATAAGCAAAGATCAGCAACACAGTGTAAGGTAAGCAAATGCATGCATATCGGCAGTGAAGACTAGCGAGGAGGAGCAAAGGGAACCAGTGTTCTACCTCCCACTGTTTGTGGTGTCATATTTATATTCCTTCTAAACATCACGTGTCCTTTCATGTGTTTGCTATAGCAAAACATCCTTTCACCTGTGTCCCCTTCAGCAAAACATCCTTTCACCTGTTTGCTCCAGCAAAACATCATTATATCCTGAGTCTCCAAAGAAACCAGAAATTTCCACTTTCCTCATTCAGAGAACAGTGTCTACTGCCCATCAATGCTGTTCTATGACTTAGGGTATGAAAATGGAGTATTTAGATGAATCAACTTGGTATGGTCACAGTGTAACAGGAACTTGAGTCATATTTTGCATAATAATTCATAATGGGTTTTCTGGGTCTACTTTTAG
Seq C2 exon
GACAGAAATTGGGAGAACAGAACACTGAAAATGCATACAAAAATCCTGGGGGAAATCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066880:ENSMUST00000119003:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=NA C2=0.762
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTGACTTTTGAGGATGTGGC
R:
AGATTTCCCCCAGGATTTTTGT
Band lengths:
182-991
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types