BtaEX0041548 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016721 | ZNF791
Description
zinc finger protein 791 [Source:HGNC Symbol;Acc:HGNC:26895]
Coordinates
chr7:14014338-14033602:-
Coord C1 exon
chr7:14033187-14033602
Coord A exon
chr7:14014573-14014699
Coord C2 exon
chr7:14014338-14014398
Length
127 bp
Sequences
Splice sites
3' ss Seq
ACATATTTGTGATGTTTTAGGAC
3' ss Score
9.36
5' ss Seq
TAAGTAAGG
5' ss Score
5.07
Exon sequences
Seq C1 exon
GAGGCCACATCTCAGTGTCCGTTCTGGGGAAGAAGTGTCACAGTTCCGTGAGGGCCTCGCGGCCATCGGATTCAATGCAGGGACCATGGAGGGGCCTCCCTGCCAGGTCAAGGTCCAAGCAAAGACGTGACCTCCGGCCTGCTGTCACTCAGGCACGGCAGGGCGGGGCCTTGCGAGCTGTCCAATCAGGGGAGTCGCCGGTTACGTACGTGTGAGCGCCTGTAGGCCACGCTCCAGTGTCGGGCGTGGGTGGCGTGGACTGCGTGCTGGTTCCCATTCGCTCCCGCAGCGCGGCAGATCCCCTTCTCTGTGTCCTTAAAAGGCTGCGGTGGCTCCGCGGCATCCTGTCAGTGTGACCTGTGCTTGCCGCGGCAGTCGGGGAGTGGATGACTGGGAAGCCAAGAAACCAAAAAATG
Seq A exon
GACCCAGTGGCCTTTGAGGATGTGGCTGTGAACTTCACCCTGGAGGAGTGGGCTCTGCTGGGGCCTTCGCAGAAGAAACTCTACAGAGATGTGATGCGGGAAACTTTGAGTAACCTGGCCTTAATAA
Seq C2 exon
GGGATAAATGGGAGGACCATAACACTGATGATCAGTACAAGAACCAGGAAAGAAATCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016721_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.524
Domain overlap (PFAM):
C1:
NA
A:
PF0135222=KRAB=WD(100=97.6)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGTTACGTACGTGTGAGC
R:
TCATCAGTGTTATGGTCCTCCC
Band lengths:
250-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development