HsaEX6093140 @ hg19
Exon Skipping
Gene
ENSG00000173875 | ZNF791
Description
zinc finger protein 791 [Source:HGNC Symbol;Acc:26895]
Coordinates
chr19:12721732-12735524:+
Coord C1 exon
chr19:12721732-12721896
Coord A exon
chr19:12734514-12734640
Coord C2 exon
chr19:12735464-12735524
Length
127 bp
Sequences
Splice sites
3' ss Seq
ACTTATATTGGATGTTTCAGGAC
3' ss Score
7.74
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
Exon sequences
Seq C1 exon
GCAAATGCGTGCTACGTCACTGTGCGATCGGGTTGTGCTTAGCTTGGGGTCTCCTGGCCCCTTGACGCGTCAGGTTGCTGTACCCCTGCATCGGATGCGCTGTACCCTGCGCTGGCTCCGTGAACCTTAGGGACAACACCGGGACACCCGCGAGGCCGGAAAATG
Seq A exon
GACTCAGTGGCTTTTGAGGATGTGTCTGTGAGCTTCAGCCAGGAGGAGTGGGCTCTGCTGGCTCCTTCACAGAAGAAACTCTACAGAGATGTGATGCAGGAAACATTCAAGAACCTGGCATCTATAG
Seq C2 exon
GGGAAAAATGGGAAGACCCGAATGTTGAAGATCAACACAAAAACCAAGGACGAAATCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173875-'0-2,'0-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.810
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAATGCGTGCTACGTCACT
R:
CTTAGATTTCGTCCTTGGTTTTTGTG
Band lengths:
226-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)