MmuEX6037023 @ mm10
Exon Skipping
Gene
ENSMUSG00000074194 | Zfp791
Description
zinc finger protein 791 [Source:MGI Symbol;Acc:MGI:3648473]
Coordinates
chr8:85112210-85119869:-
Coord C1 exon
chr8:85119635-85119869
Coord A exon
chr8:85113507-85113633
Coord C2 exon
chr8:85112210-85112270
Length
127 bp
Sequences
Splice sites
3' ss Seq
TACACACGTGGAATGTTTAGGAT
3' ss Score
3.18
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
AAGCGGCTGCAGAAAGACGTCCGGGTCTCACCAGAACAACTTAAACGCAGAAGCCCCAGCTTAAGCCCTCGGCTACCTGGTCAATCAGGAAAGGTGACTCCCTTAAGGCGGGGAGTGGGCGTGGCCATGTTATGCACATGCGCGGGACATTGTATAAATCTGTTCAGACTAAGTGACAGACAAGTGTGATTTCCTTGAGACAAGGAGAAGCATTGATCGGTGAAGGCCTGCCATG
Seq A exon
GATTCAGTGACCTTTGAGGACGTGTGTGTGACTTTCACTCAGGAAGAGTGGGATCTACTGCGTCCTGTACAGAAGAAACTCTACAAAGATGTGATGTGGGAAACTGTGAGGAACCTGGCCTCTGTGG
Seq C2 exon
CGAGTGAATTGGAAGACCAGGATGTTTCAAATCAGTACAGAATCCAAGAGGAAAATGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074194-'1-6,'1-5,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAAGACGTCCGGGTCTCA
R:
TCCTGGTCTTCCAATTCACTCG
Band lengths:
248-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types