HsaEX0073672 @ hg19
Exon Skipping
Gene
ENSG00000197647 | ZNF433
Description
zinc finger protein 433 [Source:HGNC Symbol;Acc:20811]
Coordinates
chr19:12128981-12146525:-
Coord C1 exon
chr19:12146352-12146525
Coord A exon
chr19:12140955-12141013
Coord C2 exon
chr19:12128981-12129107
Length
59 bp
Sequences
Splice sites
3' ss Seq
TAAACATTTCTTTCTGACAGTTC
3' ss Score
9.05
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GTCCATCGGGGAGGGCGAAGGCCCTGCTCTCCTCGGTTCCCGGCTCCAGGCGGCGAGCTGAGGTTGGGAGCCTGGCTTTCCCCTCCGAGAGGGTTCAGGTGCCTCTGCCATAGCTTCTGTCGCCTGTGCTGTGACCCGCACTGGTCGTGGGAGTCACCTGAAAGGCAAGAAATG
Seq A exon
TTCTGGAAGCCTGGAAGTTATGAAGTCCATGTTCAAGGTGCTGACAGATCTGGTGCCTG
Seq C2 exon
GATTCAGTGGCCTTTGAGGATGTGGCTGTGACCTTCACCCAAGAGGAGTGGGCTTTGCTGGATCCTTCCCAGAAAAATCTCTGTAGAGATGTGATGCAAGAAACCTTCAGGAACCTGGCCTCTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197647_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.211 C2=0.006
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=89.1)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGTCACCTGAAAGGCAAG
R:
GGCCAGGTTCCTGAAGGTTTC
Band lengths:
146-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)