HsaALTA0009823-1/3 @ hg19
Alternative 3'ss
Gene
ENSG00000197647 | ZNF433
Description
zinc finger protein 433 [Source:HGNC Symbol;Acc:20811]
Coordinates
chr19:12129006-12146503:-
Coord C1 exon
chr19:12146352-12146503
Coord A exon
NA
Coord C2 exon
chr19:12129006-12129107
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
ATACATGTGAGATGTTTCAGGAT
3' ss Score
0.18
Exon sequences
Seq C1 exon
CCTGCTCTCCTCGGTTCCCGGCTCCAGGCGGCGAGCTGAGGTTGGGAGCCTGGCTTTCCCCTCCGAGAGGGTTCAGGTGCCTCTGCCATAGCTTCTGTCGCCTGTGCTGTGACCCGCACTGGTCGTGGGAGTCACCTGAAAGGCAAGAAATG
Seq A exon
NA
Seq C2 exon
GATTCAGTGGCCTTTGAGGATGTGGCTGTGACCTTCACCCAAGAGGAGTGGGCTTTGCTGGATCCTTCCCAGAAAAATCTCTGTAGAGATGTGATGCAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197647-0-7,0-6,0-5-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.007
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=94.1)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATAGCTTCTGTCGCCTGTG
R:
CCACATCCTCAAAGGCCACTG
Band lengths:
92-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)