MmuALTA1040896-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000066880 | Zfp617
Description
zinc finger protein 617 [Source:MGI Symbol;Acc:MGI:2684459]
Coordinates
chr8:71913122-71928328:+
Coord C1 exon
chr8:71913122-71913248
Coord A exon
chr8:71928202-71928204
Coord C2 exon
chr8:71928205-71928328
Length
3 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
3' ss Seq
ACATATGTGGTTTGTTTTAGGAG
3' ss Score
9.91
Exon sequences
Seq C1 exon
GAGTCTGTATCTTTTGAGGATGTGGCTGTGAACTTCACTGCGGAGGAGTGGGCTTTGCTGAATTCTTCCCAAAAGAGGCTACACAGAGATGTGATGCAGGAAACCTTCAGGAATTTGGCTGCCATAG
Seq A exon
GAG
Seq C2 exon
TCAGTGACTTTTGAGGATGTGGCTGTGAACTTCACCCTGGAGGAGTGGACTTTGCTGAATCCTTCACAGGAAAATCTTTACAGAGCGGTGATGAGAGAAACCATCAGGAACCTGCATGATATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066880-4-8,4-7-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.093
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGATGCAGGAAACCTTCAGG
R:
TCAGCAAAGTCCACTCCTCCA
Band lengths:
96-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types