HsaALTD1045498-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000229739 | RP11-295K2.3
Description
NA
Coordinates
chr1:186435189-186436573:+
Coord C1 exon
chr1:186435189-186435289
Coord A exon
chr1:186435290-186435356
Coord C2 exon
chr1:186436358-186436573
Length
67 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAT
5' ss Score
7.24
3' ss Seq
TCTTTTCATGTGTCTCGTAGATG
3' ss Score
8.99
Exon sequences
Seq C1 exon
AGATTACCTTATACTTTGCTTTGTTCTCTCTGCCAGAGTCCTACCCACTGTATTAGTTGTTAGAGTTGTGGAACTTAACCGAAGCTTTCTCTGGATTCCAG
Seq A exon
GTAACTTTGTTCTTTTGTTTTTGTTTTTTTCCTGCAGAATCGATATATGGGCCTGAAATATATTAAG
Seq C2 exon
ATGTTTTAAGAATATTTTCAGCTGCATGGCTTGACAGCCTTGGGATTCCCTCACACATTCACAGTCTTTTTTGGATCAGTCTGATGTGAGCATGAAAACTGGGAGTTGTGGAGCCCACTTAGGAAATGATTGCAATTGTCCAGGAGACAGATGATGGTAATTAAGTTTCCATCAGCCTGGAACTCAGGACAGAAGATACATATTCTGTATGTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000229739-0-1,1-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCTGCCAGAGTCCTACCC
R:
ACTCCCAGTTTTCATGCTCACA
Band lengths:
182-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains