HsaEX7000712 @ hg38
Exon Skipping
Gene
ENSG00000229739 | RP11-295K2.3
Description
NA
Coordinates
chr1:186435161-186451274:+
Coord C1 exon
chr1:186435161-186435289
Coord A exon
chr1:186436358-186436573
Coord C2 exon
chr1:186451179-186451274
Length
216 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCATGTGTCTCGTAGATG
3' ss Score
8.99
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
AATAATGAATATCCATAATTGAAAACTGAGATTACCTTATACTTTGCTTTGTTCTCTCTGCCAGAGTCCTACCCACTGTATTAGTTGTTAGAGTTGTGGAACTTAACCGAAGCTTTCTCTGGATTCCAG
Seq A exon
ATGTTTTAAGAATATTTTCAGCTGCATGGCTTGACAGCCTTGGGATTCCCTCACACATTCACAGTCTTTTTTGGATCAGTCTGATGTGAGCATGAAAACTGGGAGTTGTGGAGCCCACTTAGGAAATGATTGCAATTGTCCAGGAGACAGATGATGGTAATTAAGTTTCCATCAGCCTGGAACTCAGGACAGAAGATACATATTCTGTATGTAGAG
Seq C2 exon
AATCACTGGAGGTCAAATGTCTTTGCCAATTTGAGTTTTTCCACTTGAACAAGAAAAGACTGTCAAGGGAAAGCCAATCAATTTCACAATGTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000229739-'0-5,'0-1,3-5=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTATACTTTGCTTTGTTCTCTCT
R:
ACATTGTGAAATTGATTGGCTTTCCC
Band lengths:
188-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains