HsaINT1026379 @ hg38
Intron Retention
Gene
ENSG00000116703 | PDC
Description
phosducin [Source:HGNC Symbol;Acc:HGNC:8759]
Coordinates
chr1:186446426-186449483:-
Coord C1 exon
chr1:186449399-186449483
Coord A exon
chr1:186446578-186449398
Coord C2 exon
chr1:186446426-186446577
Length
2821 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGC
5' ss Score
2.13
3' ss Seq
TATTTTTAATTTCATTCCAGGAC
3' ss Score
8.35
Exon sequences
Seq C1 exon
ATTATATCAAATCCAGTCCCTAAAATGGAAGAAGCCAAAAGCCAAAGTTTGGAGGAAGACTTTGAAGGACAGGCCACACATACAG
Seq A exon
GCAAGCAAAGCTAGAAGAAAAAATAATTATTAAATTAAAATTAAATATGGCAATATCTAATGTTCTTATTGACACTATTCAGTATGTACTTTAAGTAATATCTTTATATAAATTGTTATGCTAATCTAAAAAATATTTGAGCGGGCAAATTAATTTTTGAAATCAAATAATTCCTAACAGTTTTATTTAGATGTCAAAGAGTAAAAAAACAAAAACACCAATTACTGGTAATTTCTTGCTGCCCAGCTATCACAAGACCTCTTATCTACACTATAATTAAGCCACTTTCCTCTCTCCTGATTGTACCCCACCCTCAGTATGAACTTTCATTGTAAACAAGATTAGACCAAAAGGTTAATAAATGGCCTTTAATTTCATTTTTTTCATCTAATAAAGGGAATGATAAGATATTCCCTTTATTTTTTTGAATAAATAAATTTCAGTATTCCTCCAGAAAACTTAACACTTCATTTCATCCAGAGTCTGTTTTCTTAATCTGTTAAATTATGTTTGGCTATCTATATGCCACTCCTAAGAGCTTAAAACTTAAATTTAAAAATTCACATTTAACTCTACTAAATCTTATTTGAATGGTAATTTCCTCTCTCTTTTAATTTGGATTGAGCCATTAAATTTAGCCAGAAGTTTGAAAGAATTCACAAGAGTACCAGCCAAAATGTGTGGAGATTTATTTTATAATAGCAATGTGAGGAATACCTTCCTAATTATGACAAAAACAAAAACAACAACAAAAAGACCATTGAAGAAAAGGTTGGTAAATTCATTTATAAAAAGGAAGGAAGGATGGATGGATGAAGGGATGGAGGGAAAGTAGGAGACAGGGAAAAAAAGGAAGGAAATATCTGCTGTCTGGTAAAGGTCACCAGGAACAAAAGTCAAAAAGCATTTAACAAATTGGGGAAAAACATTTGCAACTCAGTTGACAGTGTCAGTTTCCTAATATATATTAAGAGCTTCTACAAATCGATAAGAAAAGAAACTAATTACCAAATAGAACAATGAGCAAAAGATAGGACAGACTATTCATGGGGAAAAAAAGAAACAGAAAAAAGTAACACAGAAAACTATAGTGAAAGCAAGTAAGTTTAATAACACATTTTTGGCACCCTCATACATTGCTGATAGCAGTGTAAATTGGTACAATCTCTGTACAGGCAACCTAGCAATATCAAAATTAGTAATGTATATGCCCTTTGACCAGGGAATTTTACTTATATAACCATAACTATACCTGCACAGAGTGTTAAAAATGTATGCACAAGATTCTTCACTCAGCATCATATGTCATAGAAAAAACTGGAAACAACAATGTAGATCACGATTAAACAGTTTAAGTCAATTATGTATATCTACACAATGGAACACCATGCCTCAATTTTCTAAATAAGGAAGAACCTTTTCATGTGTGTATACTGAAAAAATCTCCAAGATATAGTATGAAACAGAAAAAACAAGGTAAGGAAAAATGCAGATAATACACCACCATCTGTAGAAAACACGAACAAAATGGATTCTCTTTTTTAAACAAACATACACACATGTATATTTTGCATATGCATAAAACATATCTAAAATATTGATATGAACACTGTATGTGAAAACAAAAAGCTTTGATTGCCTGCATATAATATAAACACATTCATAACAAATTTATATTAAATATATATCATATATAAAACAAAAATTATTAGGCAATATAGAGGAGAAAGAAGGAATACATCCACATATAGAATATGATATAGAATATGGACATTAAAGGTGTAGATATAGCTAAGCTTTAGTGAAGGATAGTCAGTTTAATATTCCTTGTTTTAAAGAATTTAAGACTTTCTTAAATGAATAACGTTGTTAGTCATCAGGTCAACTGAATATCAGAATTCCAGTTGAATCATCCTTCATTTAATTAGTTTTACTTAAATCTGCCAATCTGGCCGGGCACAGTGGCTCACACTTGTAATCCCAGCACTCTGGGAGGCTGAGGTGGGCAGATTACTTGAGGTCAGCAGTTCAAGACCAGCCTGGCCAACATAGTGAAATCCCATCTCTACTAAAAATACAAAAATCAGCCAGGCGTGGTGGTATGCGCCTGTAGTCCCAGCTACTCGGGAGACTGAGGCAGGAGAATCACTTGAACCCAGGAAGTGGAGGTTGCGGTGAGCCAAAATCACGCCCCTACACTTCAGCCTGGGCAACAGAGCAAGGCTCCATCTCAAAAAAAAAAATAATCTGCCAATCCTATTCTTTCTATGTTTGCAAAATATGCCTAGAATCTTAGAAGAATGGGATGTTCTCGTAATAATTTTCCTAAAGCCATTTTAGTTTTGTTGAGGTCAGGCCCCCTGCTCACCAGTTGTTTTTTATATACTATTGTTATTTTGTTTCCCCAACATTCCCAGTTTCCTTTATTAATACTGTAATGCCAATTTTAGTTTGTTGCTGAAGTTTTTTTCTTAGGTAATAAAAGTGCTATTTTTTCCAAAATTCTAGTATCCTATCAGGACTCTAATTTTTAAATATATTAACCCCAACCTTTTGCCAGTAGTTCAAAGTGCATAATTTATATTTTCATTAGTACAAATGTTTCCGAAATATCCTTTACCAAAACCCATTTAACAAGATTAATGTGGGAGCATATTTTTATGAGCAGGGCAGTCAGAAATTTCTAGTCCAAACAAGATGTTTGTTTCTGATGCAGGAGACAATAAGTTTATTCCATGACAATACTTACACAAATTTCAATTATGCCAACAGTCCTTTTGAAAATAAAAAGGAAAACAATTTATTTTTAATTTCATTCCAG
Seq C2 exon
GACCCAAAGGAGTAATAAATGATTGGAGAAAGTTTAAATTAGAGAGTCAAGACAGTGATTCAATTCCACCTAGCAAGAAGGAGATTCTCAGGCAAATGTCTTCTCCTCAGAGTAGGAATGGCAAAGATTCAAAGGAACGAGTCAGCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116703:ENST00000391997:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.777
Domain overlap (PFAM):
C1:
PF0211411=Phosducin=PU(8.1=95.2)
A:
NA
C2:
PF0211411=Phosducin=FE(20.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains