MmuINT0116617 @ mm10
Intron Retention
Gene
ENSMUSG00000006007 | Pdc
Description
phosducin [Source:MGI Symbol;Acc:MGI:98090]
Coordinates
chr1:150328316-150330871:+
Coord C1 exon
chr1:150328316-150328400
Coord A exon
chr1:150328401-150330725
Coord C2 exon
chr1:150330726-150330871
Length
2325 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
GTTTAAATTTTTAATTTCAGGAC
3' ss Score
8.83
Exon sequences
Seq C1 exon
ACTACACCAAACCCAACCCATAAAATGGAAGAAGCCGCCAGCCAAAGCTTAGAAGAAGATTTTGAAGGACAGGCCACGCACACAG
Seq A exon
GTAACTAATGTGCAGAGAAAACATAATTATTGAAGTAAGATTAAATCTATAAGTATCTCCTGTTCTTATAGAGACTTTTACTGAATTTAAGTAATACCTCCATCTAGTCAGAAAGAATAATTTAAAAACATTTGACTAAATAAATTAGCTTAAAATGAAATGACCCGGGATTTGTTATTTGTTAATTCAGTATCAAAGAGTTTGAAAAAAACACAAATTGTTGGTAATTTCCTGCTACCCTGGTATCATAAAACTCCTCTATCTACAAATTAATAAGATTCTTTCCATTCTGACAATCCTCCTGCCTGTACCCACTACAGCCTTCCTTGGTATGCTATATATAAATATAGTGATCAAAAGTAAGTAATACATAATTTTAGCTTTATGAATGTGAAAAAAACCAAGGGTCTAATAAAGAATTCTTGAATCAATCTACCTCCAGAATATCCAAACTATCATTTCATCAGGAGGCATTCTTAACTTGTTGAATTGTATGTGGTTGATTATATGCCACTACCAAGAGCTTAGCTGTTAAGTGCTGTGACTTGAGTTTTGCATTCAGAAGCCTTTTGACTCTACAGAATCTATGTCACTAGTACCTCCCATGTCTGTAAGCATGGACAGGAACCTTTGAATTCAGTCATAGGTTTGAATGCCTTAACACTTGTACCAGAATAAGTCTAAGGGAATTTATTTAATAACAGCTACGGTGAAAGTGTCTTTCTAAGTATGAAATAAGCAAAGCAATTGTAAGAGAAAATATAGGTCAGTCTGCTGGAAGGAAACAGGGATTACAGGAGGAGGGACGGAGTGAAGGAGATAAATGGAGGGTGAGAAAAAGCAGATGCACAGAAGAGGAAAGGGAAAGAAACAAAGGAAACGCCCATTGTCTGGTAAATGTTATCAGAAGAAAATATTAAAGGAAAAATCTAACATACTTAGGAGAAACATGTACAATACAATAGACAACAAATTAATATTTTAATATAAAGAGTTTCTACAAATAATAAGAAATTAAACGGCAACCAAGTACAATAGGGATGTACTAGTTACTTGGTGTGTTTTTGTGTTACTGTGATGAAATATCCAGCCATAAACAATTTCAGGAAGGAAGAGTTCATGTGTACTCACAGTTCTAGGTACAGTCATCACAGTGGGGATGTCAAGACCAGGCACTTGAGGCAGCTGGTCCATTGTATCCACACACAGTAGGCAGAGCAAAGTGGATGGTAATGCTTAGTTACCTGTCTCCAGGACCTCGGACCATGGAATGGTGATGCTCATAGTTAAGGTTTGTCTTCCCACCTCAATTAGCTCAACTAAATAAAGTCTTACAGACGTGCTAAGAGGCTTATCTCTTAAGTGATTATAGATCACATCAGATTGATGATCAGTGTTAACCATCACAGTGGGCAAAAGATTCGCAGAGAAAAAAATAACCTAAAAAAGATACAGACATAACTTTGGCAAGATGCATTTTTTTCCACAGTAGAAAAACTGTAAGTTTAACACATCCTCTGAATGAAGCACTGGGAGGAGGACAAATCAAAGTGGTTTGACCTCTGCAAGGGCAGTTAGCACCATCACACCCAGGAAGAGGCACGTTCTTCAGTGGAGGCATTTCACTTACACTTGACAGATAGGATAAATAATTGATTATAAGATGCCTCATTCAACATCATACATGATAGAAAAATGAGGAAACAATACCACCTGTAATAACTGACTAAATTGTATAGAAATTCATAATAATTTACTGTGTTCTATAATGAAAAGAAAAAGAAGAGAAAGGATGGCGACTTGGGGTGGAGATAAGGCTCAGTGGTTAAGAGCACTTGCTGCTCTTCCAGAGGACTGTAGAATAGTAAAAATAGAAACAGGGTTGCCTGAATCAATAAAATCAGTTGTAATCACTTTATTTAAATTTATACAATCTATATCAGAAGTTAATATACAATATAATATACAATGTGAGAAAGAAAGAATACACCCAAATGTAGAATACTATGTTAATGAGGAACAAGACTAAGCCTTAGTATGGGTAGCTCTATTAATATATATAATGTAATATATATATATGGTATTGATATATATTAAATTGTTAGAATATCAGTAATATATATTCTGCCCTAATGTATGCCTACATGACAGAAGAGGGCACCAGATCTCATTACAGACGGTTATAAAACATCATGTAGTTGCTGGAATTGAACTCAGGACCTGTGGAAAAACAGCTAGTGCTCTTAGCCTCTGAGCCATCTCTCTAGCCCATGTAAGCAGTAATTTTCAGAATTAAGAGAAAAACGTTTAAATTTTTAATTTCAG
Seq C2 exon
GACCCAAAGGAGTAATAAATGATTGGAGAAAGTTTAAATTAGAAAGTGAAGATGGTGATTCAATTCCACCCAGCAAGAAGGAAATCCTCAGACAAATGTCCTCTCCTCAGAGCAGAGATGACTCAAAAGAAAGAATGAGCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006007:ENSMUST00000191228:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.765
Domain overlap (PFAM):
C1:
PF0211411=Phosducin=PU(25.3=95.2)
A:
NA
C2:
PF0211411=Phosducin=PD(73.4=92.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types