HsaINT0121713 @ hg19
Intron Retention
Gene
ENSG00000116703 | PDC
Description
phosducin [Source:HGNC Symbol;Acc:8759]
Coordinates
chr1:186415558-186418615:-
Coord C1 exon
chr1:186418531-186418615
Coord A exon
chr1:186415710-186418530
Coord C2 exon
chr1:186415558-186415709
Length
2821 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGC
5' ss Score
2.13
3' ss Seq
TATTTTTAATTTCATTCCAGGAC
3' ss Score
8.35
Exon sequences
Seq C1 exon
ATTATATCAAATCCAGTCCCTAAAATGGAAGAAGCCAAAAGCCAAAGTTTGGAGGAAGACTTTGAAGGACAGGCCACACATACAG
Seq A exon
GCAAGCAAAGCTAGAAGAAAAAATAATTATTAAATTAAAATTAAATATGGCAATATCTAATGTTCTTATTGACACTATTCAGTATGTACTTTAAGTAATATCTTTATATAAATTGTTATGCTAATCTAAAAAATATTTGAGCGGGCAAATTAATTTTTGAAATCAAATAATTCCTAACAGTTTTATTTAGATGTCAAAGAGTAAAAAAACAAAAACACCAATTACTGGTAATTTCTTGCTGCCCAGCTATCACAAGACCTCTTATCTACACTATAATTAAGCCACTTTCCTCTCTCCTGATTGTACCCCACCCTCAGTATGAACTTTCATTGTAAACAAGATTAGACCAAAAGGTTAATAAATGGCCTTTAATTTCATTTTTTTCATCTAATAAAGGGAATGATAAGATATTCCCTTTATTTTTTTGAATAAATAAATTTCAGTATTCCTCCAGAAAACTTAACACTTCATTTCATCCAGAGTCTGTTTTCTTAATCTGTTAAATTATGTTTGGCTATCTATATGCCACTCCTAAGAGCTTAAAACTTAAATTTAAAAATTCACATTTAACTCTACTAAATCTTATTTGAATGGTAATTTCCTCTCTCTTTTAATTTGGATTGAGCCATTAAATTTAGCCAGAAGTTTGAAAGAATTCACAAGAGTACCAGCCAAAATGTGTGGAGATTTATTTTATAATAGCAATGTGAGGAATACCTTCCTAATTATGACAAAAACAAAAACAACAACAAAAAGACCATTGAAGAAAAGGTTGGTAAATTCATTTATAAAAAGGAAGGAAGGATGGATGGATGAAGGGATGGAGGGAAAGTAGGAGACAGGGAAAAAAAGGAAGGAAATATCTGCTGTCTGGTAAAGGTCACCAGGAACAAAAGTCAAAAAGCATTTAACAAATTGGGGAAAAACATTTGCAACTCAGTTGACAGTGTCAGTTTCCTAATATATATTAAGAGCTTCTACAAATCGATAAGAAAAGAAACTAATTACCAAATAGAACAATGAGCAAAAGATAGGACAGACTATTCATGGGGAAAAAAAGAAACAGAAAAAAGTAACACAGAAAACTATAGTGAAAGCAAGTAAGTTTAATAACACATTTTTGGCACCCTCATACATTGCTGATAGCAGTGTAAATTGGTACAATCTCTGTACAGGCAACCTAGCAATATCAAAATTAGTAATGTATATGCCCTTTGACCAGGGAATTTTACTTATATAACCATAACTATACCTGCACAGAGTGTTAAAAATGTATGCACAAGATTCTTCACTCAGCATCATATGTCATAGAAAAAACTGGAAACAACAATGTAGATCACGATTAAACAGTTTAAGTCAATTATGTATATCTACACAATGGAACACCATGCCTCAATTTTCTAAATAAGGAAGAACCTTTTCATGTGTGTATACTGAAAAAATCTCCAAGATATAGTATGAAACAGAAAAAACAAGGTAAGGAAAAATGCAGATAATACACCACCATCTGTAGAAAACACGAACAAAATGGATTCTCTTTTTTAAACAAACATACACACATGTATATTTTGCATATGCATAAAACATATCTAAAATATTGATATGAACACTGTATGTGAAAACAAAAAGCTTTGATTGCCTGCATATAATATAAACACATTCATAACAAATTTATATTAAATATATATCATATATAAAACAAAAATTATTAGGCAATATAGAGGAGAAAGAAGGAATACATCCACATATAGAATATGATATAGAATATGGACATTAAAGGTGTAGATATAGCTAAGCTTTAGTGAAGGATAGTCAGTTTAATATTCCTTGTTTTAAAGAATTTAAGACTTTCTTAAATGAATAACGTTGTTAGTCATCAGGTCAACTGAATATCAGAATTCCAGTTGAATCATCCTTCATTTAATTAGTTTTACTTAAATCTGCCAATCTGGCCGGGCACAGTGGCTCACACTTGTAATCCCAGCACTCTGGGAGGCTGAGGTGGGCAGATTACTTGAGGTCAGCAGTTCAAGACCAGCCTGGCCAACATAGTGAAATCCCATCTCTACTAAAAATACAAAAATCAGCCAGGCGTGGTGGTATGCGCCTGTAGTCCCAGCTACTCGGGAGACTGAGGCAGGAGAATCACTTGAACCCAGGAAGTGGAGGTTGCGGTGAGCCAAAATCACGCCCCTACACTTCAGCCTGGGCAACAGAGCAAGGCTCCATCTCAAAAAAAAAAATAATCTGCCAATCCTATTCTTTCTATGTTTGCAAAATATGCCTAGAATCTTAGAAGAATGGGATGTTCTCGTAATAATTTTCCTAAAGCCATTTTAGTTTTGTTGAGGTCAGGCCCCCTGCTCACCAGTTGTTTTTTATATACTATTGTTATTTTGTTTCCCCAACATTCCCAGTTTCCTTTATTAATACTGTAATGCCAATTTTAGTTTGTTGCTGAAGTTTTTTTCTTAGGTAATAAAAGTGCTATTTTTTCCAAAATTCTAGTATCCTATCAGGACTCTAATTTTTAAATATATTAACCCCAACCTTTTGCCAGTAGTTCAAAGTGCATAATTTATATTTTCATTAGTACAAATGTTTCCGAAATATCCTTTACCAAAACCCATTTAACAAGATTAATGTGGGAGCATATTTTTATGAGCAGGGCAGTCAGAAATTTCTAGTCCAAACAAGATGTTTGTTTCTGATGCAGGAGACAATAAGTTTATTCCATGACAATACTTACACAAATTTCAATTATGCCAACAGTCCTTTTGAAAATAAAAAGGAAAACAATTTATTTTTAATTTCATTCCAG
Seq C2 exon
GACCCAAAGGAGTAATAAATGATTGGAGAAAGTTTAAATTAGAGAGTCAAGACAGTGATTCAATTCCACCTAGCAAGAAGGAGATTCTCAGGCAAATGTCTTCTCCTCAGAGTAGGAATGGCAAAGATTCAAAGGAACGAGTCAGCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116703-PDC:NM_002597:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.810 A=NA C2=0.819
Domain overlap (PFAM):
C1:
PF0211411=Phosducin=PU(8.1=95.2)
A:
NA
C2:
PF0211411=Phosducin=FE(20.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)