MmuEX1001537 @ mm10
Exon Skipping
Gene
ENSMUSG00000099447 | 2310030A07Rik
Description
RIKEN cDNA 2310030A07 gene [Source:MGI Symbol;Acc:MGI:1922834]
Coordinates
chr1:150322643-150346771:-
Coord C1 exon
chr1:150346662-150346771
Coord A exon
chr1:150344897-150344968
Coord C2 exon
chr1:150322643-150322830
Length
72 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCTTTTGCTTCACAGATA
3' ss Score
11.14
5' ss Seq
GTGGTATGT
5' ss Score
7.64
Exon sequences
Seq C1 exon
AGTTTAATCTCTCCACGTCTTGCTTGTAGATCCAGATGTAAACACTCAACATCTAGCTTCAGCTGCTGTTCTTCTGCTCTGCCATCATGGACTCTGATCCCTCTGGAACT
Seq A exon
ATATCCTGAGAAAACTTTCAGCGGCATGACCCAACAGTCTTGGGATTTTCTCAGCCACTTAATCTTTTTGTG
Seq C2 exon
TTGCTTAAGAAGCCCTATGATTGATTGGCCTGCTCTGCCTGCTCTCCCTCGCTGCTGGCATTATAGATGCCCACCACCACTGGTTAAGTGTGTGCCAGGGATCCAAACTCACACCTCTATGTTTGTGCAGCAAGCATTTTACCCATGGGTTCATCTCTCCAGTCTTCGAGGAACAGTTATTCAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000099447-'0-3,'0-0,1-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCTGCTGTTCTTCTGCTC
R:
GGTGTGAGTTTGGATCCCTGG
Band lengths:
167-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types