HsaINT1026380 @ hg38
Intron Retention
Gene
ENSG00000116703 | PDC
Description
phosducin [Source:HGNC Symbol;Acc:HGNC:8759]
Coordinates
chr1:186443566-186446577:-
Coord C1 exon
chr1:186446426-186446577
Coord A exon
chr1:186444507-186446425
Coord C2 exon
chr1:186443566-186444506
Length
1919 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TATCATTTCTTTATTCTCAGATG
3' ss Score
9.24
Exon sequences
Seq C1 exon
GACCCAAAGGAGTAATAAATGATTGGAGAAAGTTTAAATTAGAGAGTCAAGACAGTGATTCAATTCCACCTAGCAAGAAGGAGATTCTCAGGCAAATGTCTTCTCCTCAGAGTAGGAATGGCAAAGATTCAAAGGAACGAGTCAGCAGAAAG
Seq A exon
GTAAGATAATACAAAAAGCAGTAATAAATAATTTACAATGTGTTTTCTAATCTAAATCAATCTAGAGAATCACTTTAGACTATTACAAAATATATTCATTACAATATTGCTTACGCTGGCAAAAAAAAATGGAAATGAAGTGAACACCTATTGTGGCATTCTATACTAAGAACAGGTACAGTTATGAAAAGAATTCGTTACGAATACATGAGCTGACCTAGAGATAGTTTCACAATATGAGAAAGCAACATACAGAGAATTCCATCTGGGGAATTGTAACAAACCTGCTCCACTTGTTTTGAAAACATGTAAAGAAAAAATAAATGTAAAACTATTTTGAAACATGTAAAATACTACACAAATGTAACACATAATCACTATTAAAAATTTTATGCTAAGGTTAAACTTTGGAAATGTATCTGAATGCCTACATATCCATATGCCTGAATATGTGAATGAAACAAGTTTTCATATAAATGCTCAAATACATCTTCAAGTCAAATTTGTGTGGTTTGATCTGTTAAATTAACAGAACTATAGCAACAACTTAAAAATTATATGAAACATTGGAAATTTTTAGGATTAAAACTAAATTGGGACAATATTATTATTATTATTACTATTATCATTTTGAGACAGAGTCTCATTCTGTCACCCCAGCTGGAGTGCAGTGGCGCAATCTTGGCTCACTGCAACCCCTACCTCCTGGGTTCAAGCGATTCTCCTGCCACAGCCTCCCAAGTAGCTGGGACTACAGGCATGTGCCACCATTTTTTGTAGAGATGGAGTTTCACTATGTTGCCCAGTCTGTTCTCCTGGGCTCAAACAATCCACCTTCCTTGGCCTGCCAAAGTGCTGGGATTACAGGCATGAGCTCCCATACCCATCCCGGGACAGTAATCTTAAAACAGAAAAAAATATGATAAGGAAAAGAATGAGGACATTAGGGAAACAAATATAAGAAACAGAAGCAAAAGAAAGAAGTAATGAAAGCATCATAAACTTTTACTTAACTTAAATCTCAGTGTCTTCTGTAAAATGACACTAATAGTACCTACCTCAGAGGTTATCTGTAAGGATTAGATAACATAATCTACGTGAAGTACCCAACACCTGGTATGTTTTTCATAAACATTAGTTTCACGTGTTCTCAATTCTCCTCTACTTTAAAAATCCATGGTTCTGAGCTGCTCCACATCTATTAATCACACTATGCCCCATTGTTCCTTTATACCTTTTTTTCTTTTTTGGTTGGGGGAATAGGTGCTTAATATTCTGTTAAATACATTAATAATGGAGTAGCTATTATGGAAGGCCCTGCAGGTGACTTTTTATTCCAACTGCAATGAAAAGTAGCTATCTTAGAAAATGGAATTTGGGCCTTTTCTTACTTCAGCCCAAACTAGTGAATAATAATACCCTGGAGGGCTTGTTAAAATATGGATTACTTAGCCTCACTCTTATAGGTTCTAATTCAGTAAACCTAGGGTGGTGCCCAAATATTTGCATTTCCTAGAAGTTCCCAAGTGATGCTGATGCTGCTGGTCCAAAAATTAACCTCTTGGATGATCTGATGAACTCCAAATAGTAGGAAAAGCTGTCTTACTTGAATTTTTTGGATATTCAAAAAAATCAGTAAGTTATAAGATATAATAGTGTTTGTTGCTATAAAGAAAATAAACCAGCATAAAGATGGAGAGTGTGAGATGGGGACCTTTTTAGGTAAAGTAATCAAGGAAGGTGACATTTAAACAAAAGCTTCAATGAGGTGAAAGAGAAAGGCACATCAGGAGTGAAAGGTAGGTGGTCCAGGCAGAAAAAAAAGAGCAAAAGTACACTCCTTCGGTTGAGAATGGGCTTGGTATATCTAAGGAATAAAACTTCTGACTTAATAATTTCTATCATTTCTTTATTCTCAG
Seq C2 exon
ATGAGCATTCAAGAATATGAACTAATCCATAAAGAGAAAGAGGATGAAAACTGCCTTCGTAAATACCGTAGACAGTGTATGCAGGATATGCACCAGAAGCTGAGTTTTGGGCCTAGATATGGGTTTGTGTATGAGCTGGAAACTGGAAAGCAATTCCTAGAAACAATTGAAAAGGAACTGAAGATCACCACAATTGTTGTTCACATTTATGAAGATGGTATTAAGGGTTGTGATGCTCTAAACAGTAGTTTAACATGCCTTGCAGCAGAATACCCTATAGTTAAGTTTTGTAAAATAAAAGCTTCGAATACAGGTGCTGGGGACCGCTTTTCCTTAGATGTACTTCCTACACTGCTCATCTATAAAGGTGGGGAACTCATAAGCAATTTTATTAGTGTTGCTGAACAGTTTGCTGAAGAATTTTTTGCTGGGGATGTGGAGTCTTTCCTAAATGAATATGGGTTACTACCTGAAAGAGAGGTACATGTCCTAGAGCATACCAAAATAGAAGAAGAAGATGTTGAATGAAGATTCACTATGTCAATATCTCATGTTTATCCTTTAGGTATTGGATGATGGTTTTGGTAGTATCTATATTGCTTTAGTGAACACAGAGTATGGGCACGGCTATGCTAACTTGACAAAAATGACTGATGCAACAATCGAGTTATTAGCATTTCTTAGTATTAGTTACTCAAATTGATACAATGCTTGACTACAAAACAGAGCTGTCTTCAGCAACATTATTAGTAGACAAAGAGGATGTGGATAATATTATGACATTTTTCAAAAATCCCTTTCAAGTTATGTTTTGTCTTTTTTACTCCATTTTCCCTCATCACTGTTATTATTTGGACTTTTCAAATTACATTATTCATTATAATTTTCTTTGTGTAATAAAAATGAAATCTCATGAGAAAATAAATTTTCTATTTGAAGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116703:ENST00000391997:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.777 A=NA C2=0.006
Domain overlap (PFAM):
C1:
PF0211411=Phosducin=FE(20.3=100)
A:
NA
C2:
PF0211411=Phosducin=PD(70.7=98.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAAGGAACGAGTCAGCAGA
R:
TCCCCAGCACCTGTATTCGAA
Band lengths:
347-2266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains