HsaALTD1046144-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000235123 | DSCAM-AS1
Description
DSCAM antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:40197]
Coordinates
chr21:40383308-40385358:+
Coord C1 exon
chr21:40383308-40383408
Coord A exon
chr21:40383409-40383455
Coord C2 exon
chr21:40384579-40385358
Length
47 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
ATCGCACCATTGCTCTCCAGCCT
3' ss Score
3.25
Exon sequences
Seq C1 exon
GTGACACAGCAAGACTCCCTCTAAAAAAAGAAAAAAAGAAAAGAAAAGAAAAGAAAATGATATATCCATGATGAATTAAAATGGAGTGGAACCCACTGATG
Seq A exon
GTATGCAGCTGATAAGACGCTATAGAGAAATGATATCCGGACACATG
Seq C2 exon
CCTGGGCAACAAGAGCGAAACCCCATCTCAAAACCACAACAACAACAACAGGACAACAGAGATGGACGACGGATCGGGAAAGCCAACCAGACAGCGTGAGGCCAGGACGGAAAGAGGCACAGGGAGCTCTGCTCAGTGTCGCTACAGGGGATCTCTCAGGCTCACAACGGGCCACTCCTCTAGGGAAGTTCTGGTCTCATCATGATCCTTGTTTGGTCTCACTCCCCATGTCCTTCTCTGTCCCTCCTCCAACTGCCATTTATTTATTTAACTGAAAAAGTACCAATCACCCACATAGGCATGACATACTCATCCATGTACCCATTTCTTAAAATTGATCATTGTTAACATTTGGTGTAATTTGCTTTATTTATTTTTAATGAAATAAATAAAACTTTACAGAAAATGCTTTATTTTTCTCTTTGTTCCCTCCCCATCCTATATTTTTCTCCTAAAAAACCCTATTATCAGAAATATTAGTGTGTATTCCCAGTTTCGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000235123-0-3,1-3-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACACAGCAAGACTCCCTCT
R:
GGTTTTGAGATGGGGTTTCGC
Band lengths:
135-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains