HsaEX7011069 @ hg38
Exon Skipping
Gene
ENSG00000235123 | DSCAM-AS1
Description
DSCAM antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:40197]
Coordinates
chr21:40383083-40385358:+
Coord C1 exon
chr21:40383083-40383455
Coord A exon
chr21:40383506-40383584
Coord C2 exon
chr21:40384579-40385358
Length
79 bp
Sequences
Splice sites
3' ss Seq
TTCTTGTGATTCTTTCAAAGGGA
3' ss Score
6.8
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
CTTTGGGAGGCTGAGGCAGGCAGATCACCTAAGGCCAGGAATTCGACACCAGCCTGGCCAACGTGGCAAAACCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGTGTGCGCCTGGAATCCCAGCTACCCAGGAGGCTGAGGCAGGAGAAATGCTGGAACCCGGGAGGCAGAGGCTGCAGTGAGCTGAGATCATGCCACTACTGCACTCCAGCCTGGGTGACACAGCAAGACTCCCTCTAAAAAAAGAAAAAAAGAAAAGAAAAGAAAAGAAAATGATATATCCATGATGAATTAAAATGGAGTGGAACCCACTGATGGTATGCAGCTGATAAGACGCTATAGAGAAATGATATCCGGACACATG
Seq A exon
GGAAAGCCACAGAAGGTACCAGTTATCCACTCACTGACTTAGGTGCCTCCACTAGAATTCTCAGCACGTTTTTGCAGAA
Seq C2 exon
CCTGGGCAACAAGAGCGAAACCCCATCTCAAAACCACAACAACAACAACAGGACAACAGAGATGGACGACGGATCGGGAAAGCCAACCAGACAGCGTGAGGCCAGGACGGAAAGAGGCACAGGGAGCTCTGCTCAGTGTCGCTACAGGGGATCTCTCAGGCTCACAACGGGCCACTCCTCTAGGGAAGTTCTGGTCTCATCATGATCCTTGTTTGGTCTCACTCCCCATGTCCTTCTCTGTCCCTCCTCCAACTGCCATTTATTTATTTAACTGAAAAAGTACCAATCACCCACATAGGCATGACATACTCATCCATGTACCCATTTCTTAAAATTGATCATTGTTAACATTTGGTGTAATTTGCTTTATTTATTTTTAATGAAATAAATAAAACTTTACAGAAAATGCTTTATTTTTCTCTTTGTTCCCTCCCCATCCTATATTTTTCTCCTAAAAAACCCTATTATCAGAAATATTAGTGTGTATTCCCAGTTTCGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000235123-'1-3,'1-0,3-3=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGTGACACAGCAAGACTC
R:
GAGATGGGGTTTCGCTCTTGT
Band lengths:
181-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains