HsaALTD1046274-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000236283 | AC013463.2
Description
NA
Coordinates
chr2:164959255-164960967:+
Coord C1 exon
chr2:164959255-164959329
Coord A exon
chr2:164959330-164959360
Coord C2 exon
chr2:164960899-164960967
Length
31 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
TTTCTAACTGTAATTATTAGAAT
3' ss Score
4.32
Exon sequences
Seq C1 exon
ACCACTCACTCTGGGAGAAAGCAACTGGCTATGTCATGAGGAAATTGAAACCACCTATGGAGAAAGGCCCACATG
Seq A exon
GTGAGAAAGTAAAGCCTCTTCCCAATACCAA
Seq C2 exon
AATTCTGTAAGTCTGCTACGGTGACATTTCTGGTTAGGAGTCAGAGTGGATGGGACACTGAGCAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000236283-16-14,17-14-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGGGAGAAAGCAACTGGC
R:
TGTCCCATCCACTCTGACTCC
Band lengths:
124-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains