HsaEX1001938 @ hg38
Exon Skipping
Gene
ENSG00000236283 | AC013463.2
Description
NA
Coordinates
chr2:164959255-165091293:+
Coord C1 exon
chr2:164959255-164959360
Coord A exon
chr2:164960899-164960967
Coord C2 exon
chr2:165091120-165091293
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTTCTAACTGTAATTATTAGAAT
3' ss Score
4.32
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
ACCACTCACTCTGGGAGAAAGCAACTGGCTATGTCATGAGGAAATTGAAACCACCTATGGAGAAAGGCCCACATGGTGAGAAAGTAAAGCCTCTTCCCAATACCAA
Seq A exon
AATTCTGTAAGTCTGCTACGGTGACATTTCTGGTTAGGAGTCAGAGTGGATGGGACACTGAGCAATAAG
Seq C2 exon
GCAAAGTTGGACATCCCAAAGATGGCATAGATAAACATGACCAGGAAGAGCAGGAGGCCGATGTTAAACAACGCAGGAAGGGACATCATCAAAGCAAAGAGCAGCGTGCGGATCCCCTTTGCTCCTTTGATCAGACGTAGGATTCGGCCAATCCTGGCAAGACGGATCACTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000236283_MULTIEX1-1/3=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGGGAGAAAGCAACTGGC
R:
TGTTTAACATCGGCCTCCTGC
Band lengths:
168-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains