HsaALTD1046421-1/3 @ hg38
Alternative 5'ss
Gene
ENSG00000237412 | PRSS56
Description
protease, serine 56 [Source:HGNC Symbol;Acc:HGNC:39433]
Coordinates
chr2:232524307-232524844:+
Coord C1 exon
chr2:232524307-232524369
Coord A exon
NA
Coord C2 exon
chr2:232524738-232524844
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACGGTAATG
5' ss Score
6.53
3' ss Seq
GGCCTCTCCTCTTCCTCCAGGCT
3' ss Score
9.46
Exon sequences
Seq C1 exon
GATCGCGGGCTGCAGGCACTCGGTTCCCGAAGCGGAGGCCGGAGCCGCGCGGAGAAGCCAACG
Seq A exon
NA
Seq C2 exon
GCTGCCCTGGGCTGGAGCCCCTGCGACAGAAGTTGGCTGCCCTGCAGGGGGCCCATGCCTGGATCCTGCAGGTCCCCTCGGAGCACCTGGCCATGAACTTTCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000237412-14-14,15-14,16-14-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGGCACTCGGTTCC
R:
AAAGTTCATGGCCAGGTGCTC
Band lengths:
155-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains