HsaALTD1046421-3/3 @ hg38
Alternative 5'ss
Gene
ENSG00000237412 | PRSS56
Description
protease, serine 56 [Source:HGNC Symbol;Acc:HGNC:39433]
Coordinates
chr2:232524307-232524844:+
Coord C1 exon
chr2:232524307-232524369
Coord A exon
chr2:232524370-232524635
Coord C2 exon
chr2:232524738-232524844
Length
266 bp
Sequences
Splice sites
5' ss Seq
TAAGTGTGT
5' ss Score
0.33
3' ss Seq
GGCCTCTCCTCTTCCTCCAGGCT
3' ss Score
9.46
Exon sequences
Seq C1 exon
GATCGCGGGCTGCAGGCACTCGGTTCCCGAAGCGGAGGCCGGAGCCGCGCGGAGAAGCCAACG
Seq A exon
GTAATGACGCCCCCTGCCGACCTTCAGGAGGGGATAGGCTGAGGGCCTGGACGAGGTCGGAAGCGCTTCTACTGCAGCTCCGGAAAGGGCTTACCCCATGGGGCAACAGGGTGGACTCGTTCTCCCCTCCCCGCCATAGAGCGTATGACTCTTTTGGAGTACTTGTGGTTTTAGCTCTCATCAGTGTCAAACAGAGATGCTTTGCCTGGTGTTACTGCTTAACTTCTCCGAGCCTCAGTTTCCCCACCTATAGCATAAGAGGATAA
Seq C2 exon
GCTGCCCTGGGCTGGAGCCCCTGCGACAGAAGTTGGCTGCCCTGCAGGGGGCCCATGCCTGGATCCTGCAGGTCCCCTCGGAGCACCTGGCCATGAACTTTCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000237412-14-14,15-14,16-14-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGGCACTCGGTTCC
R:
GAAAGTTCATGGCCAGGTGCT
Band lengths:
156-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains