HsaALTD1046560-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000239467 | AC007405.6
Description
NA
Coordinates
chr2:170771087-170777177:+
Coord C1 exon
chr2:170771087-170771187
Coord A exon
chr2:170771188-170771427
Coord C2 exon
chr2:170777147-170777177
Length
240 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
AAATATTTTGGTTTTTGCAGGAC
3' ss Score
8.13
Exon sequences
Seq C1 exon
TGCGTTCCCGACTCGGAGCCCCCAGCTCCGCGCGAGCAGCTAGCCGGGCTGGCTCTCGGTGTGTGCCCTTCGGATGGTCTGCTGAAGAGGGCCGCCAGCTG
Seq A exon
GTAAGACACTCCGAGGCAACGACCGGTCTCCCTCTCCCTAGCCCGGTGTGCAGTCTGACCCAGCCCCCACAGCAGACCACCCCCAGACCGGGCGCCCGAGTCTGCGGACCGCTCTACCGCACCTGGTTCTGGCTCTGGGCCCCGGGCCCCGTGGCTGCCAGGGGCCGCCGGGAAGGGAGGATGCGCGCCACTGGGGTGCGCCTGGCTTGCGGCACCCTCCTCCCGCAGTGGTCGGAAGAG
Seq C2 exon
GACTTCTGTAGACAAGACAGATACTGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000239467-0-3,1-3-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains