HsaEX0000929 @ hg38
Exon Skipping
Gene
ENSG00000239467 | AC007405.6
Description
NA
Coordinates
chr2:170771113-170777425:+
Coord C1 exon
chr2:170771113-170771187
Coord A exon
chr2:170777147-170777177
Coord C2 exon
chr2:170777377-170777425
Length
31 bp
Sequences
Splice sites
3' ss Seq
AAATATTTTGGTTTTTGCAGGAC
3' ss Score
8.13
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
TCCGCGCGAGCAGCTAGCCGGGCTGGCTCTCGGTGTGTGCCCTTCGGATGGTCTGCTGAAGAGGGCCGCCAGCTG
Seq A exon
GACTTCTGTAGACAAGACAGATACTGTAAAG
Seq C2 exon
ACAGCAAAGAACAAACAGAATGGCAGATTGCTAATGTTTGATCCAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000239467_MULTIEX1-3/3=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCTCTCGGTGTGTGC
R:
GGATCAAACATTAGCAATCTGCCA
Band lengths:
97-128
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development