RnoEX6017357 @ rn6
Exon Skipping
Gene
ENSRNOG00000056087 | Erich2
Description
glutamate-rich 2 [Source:RGD Symbol;Acc:1563852]
Coordinates
chr3:56814139-56815885:+
Coord C1 exon
chr3:56814139-56814174
Coord A exon
chr3:56815282-56815312
Coord C2 exon
chr3:56815837-56815885
Length
31 bp
Sequences
Splice sites
3' ss Seq
ATTCCTTGTTTGTTTTTCAGCAA
3' ss Score
9.21
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
TCTTGTCCCTGAGTTTTGTATTCCTGAAATTCCCAG
Seq A exon
CAACTACCTAGACAAGACCGAAGTTGTAAAG
Seq C2 exon
GCACCCAAAAGCAGACAGAATGGCAGGTTGCTACTGTGTGATCCAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056087-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=0.545 C2=0.882
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGTCCCTGAGTTTTGTATTCCTG
R:
GGATCACACAGTAGCAACCTGC
Band lengths:
80-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]