HsaALTD1048403-4/6 @ hg38
Alternative 5'ss
Gene
ENSG00000259065 | RP5-1021I20.1
Description
NA
Coordinates
chr14:73787365-73789116:+
Coord C1 exon
chr14:73787365-73787465
Coord A exon
chr14:73787466-73787518
Coord C2 exon
chr14:73789027-73789116
Length
53 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGTG
5' ss Score
0.25
3' ss Seq
TGCTTTTTTCTCTATGTAAGGTG
3' ss Score
7.75
Exon sequences
Seq C1 exon
GGCTGCGGGGTAGCGGGCAGCCCTGCGCTGCCGGCCGCCTAGCCTGCACCCCCCGCCCTGGGAGGGAAGCCTCGCTCCAGCCGCGTCGTTTCCGCGCCGAA
Seq A exon
GTGCGATCCGGGGCCCCGCGCTGGAGTCCCCTGCTCTCAGGCTGGTCTGGAAG
Seq C2 exon
GTGGCAGTTGCTGGAGTACCAGGGCACCAAGTGGAGGATGTGGTAGACAGCCTCTAAGATGCGCCCCCTGCCAATGATCTCTGCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000259065-1-1,2-1,3-1,4-1,5-1,6-1-4/6
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGGAGGGAAGCCTCG
R:
GAGGCAGAGATCATTGGCAGG
Band lengths:
132-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains