HsaEX1012985 @ hg38
Exon Skipping
Gene
ENSG00000156030 | ELMSAN1
Description
ELM2 and Myb/SANT domain containing 1 [Source:HGNC Symbol;Acc:HGNC:19853]
Coordinates
chr14:73738560-73789959:-
Coord C1 exon
chr14:73789825-73789959
Coord A exon
chr14:73759763-73759933
Coord C2 exon
chr14:73738560-73740255
Length
171 bp
Sequences
Splice sites
3' ss Seq
AAACTTCTCAGCCTCGGGAGGCG
3' ss Score
-9.91
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GACAAAGCCCTGACTCCACAGCCACTGTTTGGGCCAAGCCCTCAGGGATCAGGGTAAATGCCTGGAGGAGGAGGAAGAGGATGCCTGGACAGATGTCAATTCTGGTGACACAAAGACATCTGTATGTGCTGTCAG
Seq A exon
GCGCGGGCTGGCGGAAGCCCCGCGAGCGCCGCGGGGAGGCGACGGCGCCTGTTTGTTTTTAAAATCGGGAGTGCGTGCAGGCGGCTGGAGTCCCGGAGGCGACCGAAGGCGGCGACCCGCGGCGGAAGGGGGACAGCCGAGCCCGGAGCCCGGAGCCCGGGCAAGAGCTGG
Seq C2 exon
GTGCCAGAACCCTGTGGAGCATCATGAACTGGGAAGAGTAGCTGAGCCCCAGAGCCTCTCTGGAAGAGAAAGGAAGAGCCAGCAGTTCTTTCTCCCAGTGTCCGACCTCACTGTCCAGCGTCTTCCTCTGCCCCTGCTCTGCCCTCCCTGGCTCCTGGACTAGAGCCCGGCTTCCAGCAGGACGTTTCCCCAGGGGATGGGCGACTGTTGAAGGGGATCTCACCGCCAGGGCTCAGTTGGCCACATCATGAACCTCCAGGCCCAGCCCAAGGCTCAGAACAAGCGGAAGCGTTGCCTCTTCGGGGGCCAGGAACCAGCTCCCAAGGAGCAGCCCCCTCCCCTGCAGCCCCCCCAGCAGTCCATCAGAGTGAAGGAGGAGCAGTACCTCGGGCACGAGGGTCCAGGAGGGGCAGTCTCCACCTCTCAGCCTGTGGAACTGCCCCCTCCTAGCAGCCTGGCCCTGCTGAACTCTGTGGTATATGGGCCTGAGCGGACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156030_MULTIEX2-3/4=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.965
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAAAGCCCTGACTCCACAG
R:
GGTCGGACACTGGGAGAAAGA
Band lengths:
242-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains