HsaALTD1049154-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000267254 | ZNF790-AS1
Description
ZNF790 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:27617]
Coordinates
chr19:36823731-36828101:+
Coord C1 exon
chr19:36823731-36823812
Coord A exon
NA
Coord C2 exon
chr19:36827650-36828101
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAAGTATTA
5' ss Score
-1.39
3' ss Seq
ATTTAACTTTTCCTCCACAGGGG
3' ss Score
10.35
Exon sequences
Seq C1 exon
GTCCAGGCACTCCCACTCCTCCTGAGAGAAATCTACAGCCACATCCCTGAACATCATCAACTGTTGGAAAGAATAATTCCAA
Seq A exon
NA
Seq C2 exon
GGGCTCACCAGAGAAGACAGGGCAAGGTGAGGGGGATCTCCTAGCAGAGGAAACAACATGCGCCAATCAAGCAAAGATATTTTTGTGCATTCAAGGAACACAGAGAGGAAAGACAGTGGCAGATGGAGACGTATAAAGCAGGGATCCTGTTATGAAAAGCCCTAAAAAATAGGGTATAGAGTTTGGGCCATATTTCAGAGGTAATAAGAAAGCATTCTGCATTTTTAAAGTAAGGTTTAAAAATGTTTCTAATTAGAGATACAGCAAAGTTGGTGTGAGAGGATAAAGACTGATATACATAATCTGAGGAGTTCATGAAAATTCCATGTAAAGCCTGTAGTATGAATTGGTCCTAGGAGACAGACAGCTTCAGGGGCATAGAGAACTTTAAGCACTTTTCCAAGAAGAGTGAAGGGCTGGAGAATAAATTGTGAACTAAAATATATTTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000267254-13-10,14-10-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCCCACTCCTCCTGAGAG
R:
TTGCCCTGTCTTCTCTGGTGA
Band lengths:
100-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains