HsaALTD1049229-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000267653 | RP1-193H18.3
Description
NA
Coordinates
chr17:69477139-69485349:-
Coord C1 exon
chr17:69485248-69485349
Coord A exon
NA
Coord C2 exon
chr17:69477139-69477550
Length
0 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
CCTCTCACCTCCCACTTCAGTCC
3' ss Score
6.66
Exon sequences
Seq C1 exon
GCCTCCTCCGTTCCAAAGTTGCTCATCCTAAAACCTGAAAAAAAAAATGACTCAGAAGTGGTTCCCATCTCAAGAACTACCCACGAGTCTCAGTGGACACAT
Seq A exon
NA
Seq C2 exon
TCCCCGATGCAGCCTTCCAATCCAGCAGAGGTTCCAACCAACTTCCAAACAGGTGCAACTTGATGGCACCTCATTTTTGGCTGTACCAGATGCCTTCTATCTCTGGACTCCTGCCCTCAGACTTCTCCGACACCTGAAGAAAGCTTCTGGGACAGCTGACATGCACAACCTGGGAGCTAAAACATGTGGGACCAGCTGTGACCAATGAACAATGATGGACAGGAGACGATAACCCCATTAGTTCCTTACAGTGCTGAGATAAATTTCATGAGTCTCCTAGAAGATCTGATGGGATTGAACATCAGTTGTACCTAGCATGGCCGCTGTACTGGCTTTCCTTCCTTCCCTATTTCATCCCCCCTCGTCCCTCCTACTCCTTGGGATCACATTGACAAATAAGTCTCTTGCATGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000267653-3-3,4-3-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACCCACGAGTCTCAGTGG
R:
TGCCATCAAGTTGCACCTGTT
Band lengths:
95-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains