HsaALTD1049546-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000272917 | RP11-705C15.5
Description
NA
Coordinates
chr12:9643003-9653808:+
Coord C1 exon
chr12:9643003-9643103
Coord A exon
NA
Coord C2 exon
chr12:9653683-9653808
Length
0 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
CTGATGTTTCTATTTTACAGATA
3' ss Score
10.42
Exon sequences
Seq C1 exon
ACCAAGTAATGTACCTGGTGCAAGGAAACAGAGACGACCTTTCTGTCTTCAGCCTCTGCTATTGGGAGCTTCACACAGAGGATGAGAGAGAGCGGATGGTG
Seq A exon
NA
Seq C2 exon
ATAAAACTCTGCAAAGACAATGTCTAGCACTTATATCTCCAGTAACTCCTGTCAAGGTTTATTGTTGCTTGTTCATCATTGCAGTCCTGACTACAAGTGTGATTGCACTTTCTATTGTTTTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000272917-1-1,2-1-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGGAGCTTCACACAGAGGA
R:
AGGACTGCAATGATGAACAAGCA
Band lengths:
128-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains