HsaINT1037568 @ hg38
Intron Retention
Gene
ENSG00000256442 | RP11-705C15.4
Description
NA
Coordinates
chr12:9647014-9648009:-
Coord C1 exon
chr12:9647841-9648009
Coord A exon
chr12:9647377-9647840
Coord C2 exon
chr12:9647014-9647376
Length
464 bp
Sequences
Splice sites
5' ss Seq
CGGGTCTGG
5' ss Score
0.96
3' ss Seq
GCACATTCCTTTCTCTTTAGGCG
3' ss Score
8.14
Exon sequences
Seq C1 exon
GGGCTGGATCCCCCGCCTACCGTTTCCCCGCAGCCGCCGGCGCTTCTGGCGCTTGTGACCCGAGCAGGAAGCCCAGAGAGAAACCAGAAAGACAGGAAGGGGATTCCTGGACTTCCTTTCCACATCCGGCAGGAACGCGACCCTCCTCCAGCTAGGAGCGCTTGTCCGG
Seq A exon
GTCTGGTGGACCCCTTACCCTGTGATAAGGACCCAGAGGATGCCCTTGTCCCCGGGATTAGGGGGAACCCAATGGAGGCCTCCACCCGGGGCCGATTCCCACCCTGGGCCACAGGAGCTTTTTAGGCAGTGAAACTATTCTATGTGTAATGGTGGATATGTTATAGGAGGCAGAAACGAATTATTTGGGTAGACAGGGTAAAGCCAGTCCCCGGTAGAAAACTTTGCTTTTAACAAAAAGCAGCTCAAAAATAGCTCCCTTGCTAACCTCATGCAGTTCAAAGAAATCACTTTTCTAACAAGAGGCCTGAAAGAGCAGACAGTAAAACACAGAAAAGACAGCTGGGACACAGAAGGACTGGGGTGGACAGCCGAGAGTCTCCCGGGTAATCACCAAGCTTCACACTTACACGATGGGCCCCAGTAAAACAGTGGGCCTTAATAAGCACATTCCTTTCTCTTTAG
Seq C2 exon
GCGCACCAAGATGCCTGCAGCTTCAAGAAGATGTATGGGAACAGACACAGAAACTTTCCCTACCAGATAAGCAGGACAAAGAAACACAGACTAAGAGTTGGCCTGTGTGGTCACGGAGTGGGTTAAGAGATGATAAAAAAATCTGCTCTGTACAGATGGCACACCTGGTCCCAACTAAACCCTGGGGCCCTAGAAAGATAAGACATCCCCTCCTCACAAGCCCCTCCTCAAGAGCCCCCTCCTCAAGAGCCCATTTATAAAAACTCTGACATTCTTAACTACAACTTGGCAATCTTCTCAGGATCCCTCTCTAACAGAGACCTGTTCTTTCCTTTTGCCTATTAAACTCCTGCTCCAAACTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000256442:ENST00000546259:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGAAGCCCAGAGAGAAAC
R:
CTTGAGGAGGGGGCTCTTGAG
Band lengths:
353-817
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains