HsaALTD1050061-5/6 @ hg38
Alternative 5'ss
Gene
NA
Description
NA
Coordinates
chr7:150405289-150408488:+
Coord C1 exon
chr7:150405289-150405317
Coord A exon
chr7:150405318-150405579
Coord C2 exon
chr7:150407584-150408488
Length
262 bp
Sequences
Splice sites
5' ss Seq
GGGGTGGGT
5' ss Score
3.34
3' ss Seq
CCCCGCTTCTGTCTCCCTAGGGA
3' ss Score
11.89
Exon sequences
Seq C1 exon
GAGACGGAAGGCTCGGGAGGCGGCGCCAT
Seq A exon
GTGAGTGCGCGCGGGGCCGCGCTGGGGCCGCGGCGGGAGGTTACCGTATTTACCGAGGCCAGAGCCGGACCCTCGGGGGCGGGTCACTGCGGGCGTGCTACCGTATTTGCCGGGTCCCGCGCAGGTCCTTTCCGGGAGTGGGAGCGCCGGGACTTAATTACGTATTTATCCAGGGTTGCGTGGCTCCGCGGGGGGGCGCTGCGGCCGTGGGGGGTGGGCTGCATTCATTCCCTCTGGGAGCTGGGGCTTGCAGTCGGGCGGG
Seq C2 exon
GGACTGGTGATTGCAGCTGGAAGTGCCCATGACCGAGCTGGCGTCCTCCGGGGGCGGGTCCCCTGCGGGGGACGGGGAGGAGGGTCTGGGGGACGAGCGAGGCCTGGTCATCCACCACCCTGCAGAGGAGCAGCCCTACCGCTGCCCGCTGTGCGGCCAGACCTTCTCGCAGCAGCCCAGCCTGGTGCGGCACCAGAAGGCGCACGCCGGAGCGGGCCGCGCGGCTGCCTTCGTGTGTCCCGAGTGCGGCAAGGCCTTCAGCGTCAAGCACAACCTCGAGGTGCACCAGCGCACGCACACCGGGGAGCGGCCCTTCCCCTGCCCCGAGTGCGGCCGCTGCTTCAGCCTCAAGCAGAACCTGCTCACGCACCAGCGCATCCACAGCGGCGAGAAGCCGCACCAGTGCGCGCAGTGCGGCCGCTGCTTCCGCGAGCCGCGCTTCCTGCTCAACCACCAGCGCACCCACGCGCGCATGCCCGCGCCGCACCCGCGCCGCCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000284048-7-4,8-4,9-4,10-4,11-4,12-4-5/6
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGGAAGGCTCGGGAGG
R:
GAGGTTGTGCTTGACGCTGAA
Band lengths:
304-566
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains