MmuALTD1030798-2/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000053297 | AI854703
Description
expressed sequence AI854703 [Source:MGI Symbol;Acc:MGI:2141510]
Coordinates
chr6:48627281-48630004:+
Coord C1 exon
chr6:48627281-48627320
Coord A exon
chr6:48627321-48627372
Coord C2 exon
chr6:48629128-48630004
Length
52 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
CTCCGCTTCTGCTTCTCCAGGAG
3' ss Score
9.07
Exon sequences
Seq C1 exon
TAGGATCCCGCGGTCTCGCGGGGGGCGCTGCGGGCACCGG
Seq A exon
GTGGGTCGATTGCATGCGTTCCTCCAGGAGATGGGGTTGGCAGCTCAACAAG
Seq C2 exon
GAGCTGGTGATTGCATCTGGAAGTGCCCATGACAGAGCTGGTGTCCTCCAGGGGAGGGTCCCCTACAGGGGACGGGGAGGAGGGTCTGGGGGACGATCAAGGCCTGGTTATCCACCACCCGGCGGAGGAACAGTGCCACCGCTGCCCACTGTGCGGGCAGACCTTCTCCCAGCAGCCCAGCCTGGTGCGGCACCAGAAGGCGCACGTGGGGGCTGGCCGCGCAGCCGCCTTCGTGTGTCCCGAGTGCGGCAAGGCCTTCAGCGTCAAACACAACCTGGAGGTGCACCAGCGCACGCACACCGGCGAGCGGCCCTTCGCCTGCCCCGAGTGCGGCCGCTGCTTCAGCCTCAAGCAGAATCTGCTCACGCACCAGCGCATCCACAGCGGCGAGAAGCCGCACCAGTGCGCGCAGTGCGGTCGCTGCTTCCGCGAGCCGCGCTTCCTGCTCAACCACCAGCGCACCCACGCGCGCATGCCCACGCCGCACCCGCGCCGTCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053297-1-3,2-3,3-3-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=11.3),PF143531=CpXC=WD(100=27.5),PF077546=DUF1610=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=12.3),PF134651=zf-H2C2_2=WD(100=12.7),PF0009621=zf-C2H2=WD(100=12.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGGATCCCGCGGTCTCG
R:
CTTGATCGTCCCCCAGACCC
Band lengths:
141-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types