MmuEX0002772 @ mm10
Exon Skipping
Gene
ENSMUSG00000053297 | AI854703
Description
expressed sequence AI854703 [Source:MGI Symbol;Acc:MGI:2141510]
Coordinates
chr6:48626764-48630315:+
Coord C1 exon
chr6:48626764-48627113
Coord A exon
chr6:48629128-48630004
Coord C2 exon
chr6:48630172-48630315
Length
877 bp
Sequences
Splice sites
3' ss Seq
CTCCGCTTCTGCTTCTCCAGGAG
3' ss Score
9.07
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GCACTGGTCCCAGAGTCCCAGCCAGCTTCCAGGAGCTGGGGTAGGTCCAAAGCCTTAGCTAGCCTGGGGATGAAGAAGATGAAGATCTTGCTCCTCCGTAAAGAAGGATGGCCAGGGATGGGGTTGTTGGGACACTGAGGTGACTTCCTGCAAGGCAACGCTGGCCCTAGAATCTGGACCCCCCTTTTTTTTTTTCCCAGGCAGGCGCAGCGCTCGCTGCCTCCCTTTTCCCCGCCAGCCAGGTTGTTGGCGCGTTAGACCTCCCAGCCTCACGGGGCTGCTGTGCGGCTGCGACGAAGCTGGCGACTGCGGCGCTGCAGCAGAGGCAAGGGCTCCAGAGGCGGCGCCAC
Seq A exon
GAGCTGGTGATTGCATCTGGAAGTGCCCATGACAGAGCTGGTGTCCTCCAGGGGAGGGTCCCCTACAGGGGACGGGGAGGAGGGTCTGGGGGACGATCAAGGCCTGGTTATCCACCACCCGGCGGAGGAACAGTGCCACCGCTGCCCACTGTGCGGGCAGACCTTCTCCCAGCAGCCCAGCCTGGTGCGGCACCAGAAGGCGCACGTGGGGGCTGGCCGCGCAGCCGCCTTCGTGTGTCCCGAGTGCGGCAAGGCCTTCAGCGTCAAACACAACCTGGAGGTGCACCAGCGCACGCACACCGGCGAGCGGCCCTTCGCCTGCCCCGAGTGCGGCCGCTGCTTCAGCCTCAAGCAGAATCTGCTCACGCACCAGCGCATCCACAGCGGCGAGAAGCCGCACCAGTGCGCGCAGTGCGGTCGCTGCTTCCGCGAGCCGCGCTTCCTGCTCAACCACCAGCGCACCCACGCGCGCATGCCCACGCCGCACCCGCGCCGTCCCGGTGTCTTCGGGGAGCGGCGACCCTACTTCTGCCCTCGCTGCGGCAAGAGCTTCGCGCGTGAGGGTTCGCTCAAGACCCACCAGCGCAGCCATGGCCACGGGCCCGAGAGCCAAGCGGCCCATTTGAGCCGTGTGCTATGACCTGTGGGAGACCTGCTACCACCAGCTGTCTCCAATCCAGAAGCCACATCCAAGGGTGCTAAATTGCAGTGCCCTGTCTGGATGGGCTCCTGGGAGGGGGCAGGGCCAGCTTAGGGTGTTGAAAGGCCTCCGGGCCACCCCTCCCCCTTGTCTTCCTGCCCTTGGACCCCTTGGCTGGCTGCATGTATCTGCTTTGGGCACCTGCATTAATTTGCCTCCTCCGGCTGCCTAGAGCAG
Seq C2 exon
CATGTCAGACTTGAAAGCTACTTGGAGAAGGTCACTTGCCACGGTTCCCAGACCCAAGCTCGGTCCCCAAAGCCTCAGCCTCCTGTACCCACTGCCTGGTGGCCTTGAGAAGCCATTCCACTCCATGTCTCAGTTTGCTTATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053297-'0-4,'0-3,9-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
PF0009621=zf-C2H2=WD(100=11.3),PF143531=CpXC=WD(100=27.5),PF077546=DUF1610=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=12.3),PF134651=zf-H2C2_2=WD(100=12.7),PF0009621=zf-C2H2=WD(100=12.3)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTAAAGAAGGATGGCCAGGG
R:
GTACAGGAGGCTGAGGCTTTG
Band lengths:
342-1219
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types