HsaEX0074340 @ hg19
Exon Skipping
Gene
ENSG00000196456 | ZNF775
Description
zinc finger protein 775 [Source:HGNC Symbol;Acc:28501]
Coordinates
chr7:150104672-150105872:+
Coord C1 exon
chr7:150104672-150104951
Coord A exon
chr7:150105428-150105576
Coord C2 exon
chr7:150105730-150105872
Length
149 bp
Sequences
Splice sites
3' ss Seq
GGATCCCGGGAGAGGGGCAGCGC
3' ss Score
-16.05
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GGACTGGTGATTGCAGCTGGAAGTGCCCATGACCGAGCTGGCGTCCTCCGGGGGCGGGTCCCCTGCGGGGGACGGGGAGGAGGGTCTGGGGGACGAGCGAGGCCTGGTCATCCACCACCCTGCAGAGGAGCAGCCCTACCGCTGCCCGCTGTGCGGCCAGACCTTCTCGCAGCAGCCCAGCCTGGTGCGGCACCAGAAGGCGCACGCCGGAGCGGGCCGCGCGGCTGCCTTCGTGTGTCCCGAGTGCGGCAAGGCCTTCAGCGTCAAGCACAACCTCGAG
Seq A exon
CGCTGGCTTGGGCTCTTGAAGGTGTGGGCCGCCGCCAGGCTCCGGCCGCCCGCTCGCGTTCCTCCCTCGGGACCCTCTGGCTGGCTGCGCACAGCTGCTTCCGGCTCCTGCCATGGTTCTCCTTCTCTGGCCCATCCGGCCTAGAGCAG
Seq C2 exon
AATGTCAGAGTTGAAAGAGACTTGGAGAGGCCACTTTCCACAAACCCCACGCCCAACCTCAGCCCCTAGGCCTCCTGGCTCCTGTACACACTCTCTGCTGTCCTTGAGATGTCATTTCACTTCATGTTTCAGTTTACTCATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196456_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGAGGAGCAGCCCTAC
R:
GAGTGTGTACAGGAGCCAGGA
Band lengths:
253-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)