MmuEX0002772 @ mm9
Exon Skipping
Gene
ENSMUSG00000053297 | AI854703
Description
expressed sequence AI854703 [Source:MGI Symbol;Acc:MGI:2141510]
Coordinates
chr6:48576763-48580314:+
Coord C1 exon
chr6:48576763-48577112
Coord A exon
chr6:48579127-48580003
Coord C2 exon
chr6:48580171-48580314
Length
877 bp
Sequences
Splice sites
3' ss Seq
CTCCGCTTCTGCTTCTCCAGGAG
3' ss Score
9.07
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GCACTGGTCCCAGAGTCCCAGCCAGCTTCCAGGAGCTGGGGTAGGTCCAAAGCCTTAGCTAGCCTGGGGATGAAGAAGATGAAGATCTTGCTCCTCCGTAAAGAAGGATGGCCAGGGATGGGGTTGTTGGGACACTGAGGTGACTTCCTGCAAGGCAACGCTGGCCCTAGAATCTGGACCCCCCTTTTTTTTTTTCCCAGGCAGGCGCAGCGCTCGCTGCCTCCCTTTTCCCCGCCAGCCAGGTTGTTGGCGCGTTAGACCTCCCAGCCTCACGGGGCTGCTGTGCGGCTGCGACGAAGCTGGCGACTGCGGCGCTGCAGCAGAGGCAAGGGCTCCAGAGGCGGCGCCAC
Seq A exon
GAGCTGGTGATTGCATCTGGAAGTGCCCATGACAGAGCTGGTGTCCTCCAGGGGAGGGTCCCCTACAGGGGACGGGGAGGAGGGTCTGGGGGACGATCAAGGCCTGGTTATCCACCACCCGGCGGAGGAACAGTGCCACCGCTGCCCACTGTGCGGGCAGACCTTCTCCCAGCAGCCCAGCCTGGTGCGGCACCAGAAGGCGCACGTGGGGGCTGGCCGCGCAGCCGCCTTCGTGTGTCCCGAGTGCGGCAAGGCCTTCAGCGTCAAACACAACCTGGAGGTGCACCAGCGCACGCACACCGGCGAGCGGCCCTTCGCCTGCCCCGAGTGCGGCCGCTGCTTCAGCCTCAAGCAGAATCTGCTCACGCACCAGCGCATCCACAGCGGCGAGAAGCCGCACCAGTGCGCGCAGTGCGGTCGCTGCTTCCGCGAGCCGCGCTTCCTGCTCAACCACCAGCGCACCCACGCGCGCATGCCCACGCCGCACCCGCGCCGTCCCGGTGTCTTCGGGGAGCGGCGACCCTACTTCTGCCCTCGCTGCGGCAAGAGCTTCGCGCGTGAGGGTTCGCTCAAGACCCACCAGCGCAGCCATGGCCACGGGCCCGAGAGCCAAGCGGCCCATTTGAGCCGTGTGCTATGACCTGTGGGAGACCTGCTACCACCAGCTGTCTCCAATCCAGAAGCCACATCCAAGGGTGCTAAATTGCAGTGCCCTGTCTGGATGGGCTCCTGGGAGGGGGCAGGGCCAGCTTAGGGTGTTGAAAGGCCTCCGGGCCACCCCTCCCCCTTGTCTTCCTGCCCTTGGACCCCTTGGCTGGCTGCATGTATCTGCTTTGGGCACCTGCATTAATTTGCCTCCTCCGGCTGCCTAGAGCAG
Seq C2 exon
CATGTCAGACTTGAAAGCTACTTGGAGAAGGTCACTTGCCACGGTTCCCAGACCCAAGCTCGGTCCCCAAAGCCTCAGCCTCCTGTACCCACTGCCTGGTGGCCTTGAGAAGCCATTCCACTCCATGTCTCAGTTTGCTTATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053297_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTAAAGAAGGATGGCCAGGG
R:
GTACAGGAGGCTGAGGCTTTG
Band lengths:
342-1219
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: