HsaALTD1051472-1/3 @ hg38
Alternative 5'ss
Gene
ENSG00000228401 | HSPC324
Description
uncharacterized LOC101928612 [Source:EntrezGene;Acc:101928612]
Coordinates
chr9:136648610-136660425:-
Coord C1 exon
chr9:136660325-136660425
Coord A exon
NA
Coord C2 exon
chr9:136648610-136649065
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGCAGGT
5' ss Score
1.9
3' ss Seq
ACTTACTTCATAATTTTCAGAGC
3' ss Score
8.04
Exon sequences
Seq C1 exon
GGCCTGGGCTCAGGCCCAGAGTGCCAGCTTTGCCCTATCCCATAGCCTGGAGCCACCACAGGAGGGGCACTCCACTCTCTTGGGCTCCTGGAGCCTCAGAG
Seq A exon
NA
Seq C2 exon
AGCCAGCCGGGAGTGCAGGAGGGAGAACTTTCCTGTGGACGTCCTGTGTTCTCCAGACGCAGAGAACCCTCATCAACCGAGGGGGAGGTCACTTCCGAATCCACAGATGGCGTGTGAGTGCATGGCGAGCGCCTCCAGGACACACTTACTGTTCCCTTGCTCTGGCCAGACGCCAGCCGGACCCTGTGTGTGCGCGCCGTGCTGCTCTTTGCAGCTGCCTGCAAGGGGTTCCTGCGAAGACCAGCACCTTGGGGAAGAGCCTGCGGCTGAACTTGAACTCGCAGCTACCTGAGTCAGACCTGTGCTTTTTCACCTCTACGGAAGATGTCAGAGCGTTTCCCTAGCAATGTTTTAGAAGTTACTTCTGTCTGGAAAAAAATGGAAAAAATGGCAAATTATGTTATGTATAATTTGATAATTTTAAAGAATTAATGATGTAATTATTACTCAAACCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000228401-0-2,1-2,2-2-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTGCCCTATCCCATAGCC
R:
GGAAAGTTCTCCCTCCTGCAC
Band lengths:
108-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains