HsaEX1012794 @ hg38
Exon Skipping
Gene
ENSG00000172889 | EGFL7
Description
EGF like domain multiple 7 [Source:HGNC Symbol;Acc:HGNC:20594]
Coordinates
chr9:136658856-136664785:+
Coord C1 exon
chr9:136658856-136659630
Coord A exon
chr9:136662785-136663108
Coord C2 exon
chr9:136664692-136664785
Length
324 bp
Sequences
Splice sites
3' ss Seq
GTGGCCCCCACCCCCCTCAGCCT
3' ss Score
4.88
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GTGGGTCAGGGGCCGGAGCAGGCAGGGAGAGGTGAGAGGAAAGGCTGGGGACCCTCACTTCTCCCTGCCCAAACCCTCGCTCGGGAGCAGACGGCTCCTCTGCCCGCAGGCACCCCTGCCTGGCAGCTCCCTCCAGCCCCCGTCGGGTCCGGGACGTCCTCTGATGGGAAGGTTCCACCACATCCGTGGCTGACAGAGCCAGCCCGTCCGAGGCCGGGGGGCGCTCGGGGTAAACAGGAAGCCCCATCCCTCCCGCACTCTGCTTCACTCCCTCCTCCTGCACCTCCTGCAGCCCGGCTCCCGCGGCCGCGCCTGGTGCCCCTCTGTCTCGCGCCACCTGAGATGCCCAGGCTGGCCTCTGCCAGGGGCTTAGTCTGCCCTCTCCTGGGGCTTCAGAGGCCAAAAGCACCCTGGTGAGGGGTCCGGGAGGCCCGGGAGGGCCCGGGGGGCTCTGCCAGGCCCCTCCACGCCTCTCTGCCCAGCCAGCACGCTCTGGGAAG
Seq A exon
CCTCCTGTTTGTCCGACGACACGTCCCCGTTATCAGCGGAGAACACACACAGGAAGTCCGGCTGGGAAGGGCCCATCCCAATCCCGATTACCCAGGACGGAGCATAAAAAGCCGCCCTTCCTCGCCCGGGGGGAGCCTCCCTGCACCAAGCTGGCCCTGCACGGCTGCAAGGGAGGCTCCTGTGGACAGGCCAGGCAGGTGGGCCTCAGGAGGTGCCTCCAGGCGGCCAGTGGGCCTGAGGCCCCAGCAAGGGCTAGGGTCCATCTCCAGTCCCAGGACACAGCAGCGGCCACCATGGCCACGCCTGGGCTCCAGCAGCATCAG
Seq C2 exon
CAGCCCCCAGGACCGGGGAGGCACAGGTGGCCCCCACCACCCGGAGGAGCAGCTCCTGCCCCTGTCCGGGGGATGACTGATTCTCCTCCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172889_MULTIEX1-1/5=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAACAGGAAGCCCCATCCCT
R:
GAGAATCAGTCATCCCCCGGA
Band lengths:
355-679
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains