HsaALTD1051548-1/4 @ hg38
Alternative 5'ss
Gene
ENSG00000143319 | ISG20L2
Description
interferon stimulated exonuclease gene 20 like 2 [Source:HGNC Symbol;Acc:HGNC:25745]
Coordinates
chr1:156726906-156728515:-
Coord C1 exon
chr1:156728415-156728515
Coord A exon
NA
Coord C2 exon
chr1:156726906-156727769
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
AGGATCACTTTCTTCCCCAGGGT
3' ss Score
7.84
Exon sequences
Seq C1 exon
CGTTCTAACCCGCGCGCCTGCCTTCCCGGGCTTCGTCGGCGCGCACCGATTTCCGCATCCGGCTCCGGACGCTTCCGGTCTTAGCTGGACCCGTCTGGGAG
Seq A exon
NA
Seq C2 exon
GGTGTACTACAGACCTCCACATGTTGGACAGTAGGATTCAGCAGAGAATGAGTCCCACATCCTCTTTTCATCCATAAGCCACTCTTCCCAACTACTCTTCCGCCTTCCATTGTCCCTATGTCTACTTTACTGCTCAATCTGGATTTTGGGGAACCTCCTCCCAAAAAGGCATTAGAAGGAAATGCCAAGCACCGAAATTTTGTCAAGAAGCGGAGGCTCTTAGAACGGAGAGGCTTTCTGAGTAAAAAGAACCAACCCCCTAGCAAGGCGCCTAAGTTGCACTCTGAACCTTCAAAGAAAGGGGAAACTCCTACGGTCGATGGCACTTGGAAGACCCCTTCCTTCCCAAAAAAGAAGACAGCTGCTTCCAGCAATGGGTCAGGACAGCCCCTGGACAAGAAAGCTGCAGTGTCTTGGTTGACCCCTGCCCCTTCAAAAAAGGCTGATTCTGTTGCTGCTAAAGTAGATTTGCTGGGGGAGTTCCAGAGTGCCCTTCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143319-0-2,1-2,2-2,3-2-1/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.676
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0092919=RNase_T=PU(44.2=27.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTTAGCTGGACCCGTCT
R:
GGACAATGGAAGGCGGAAGAG
Band lengths:
140-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains